Protein–RNA interactions for Protein: A0A0B4J276

TRAV25, T-cell receptor alpha variable 25 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV25A0A0B4J276 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRAV25A0A0B4J276 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRAV25A0A0B4J276 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRAV25A0A0B4J276 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV25A0A0B4J276 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV25A0A0B4J276 AC018755.3-202ENST00000596210 929 ntBASIC18.19■□□□□ 0.5
TRAV25A0A0B4J276 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
TRAV25A0A0B4J276 AC012354.3-201ENST00000623734 483 ntBASIC18.19■□□□□ 0.5
TRAV25A0A0B4J276 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV25A0A0B4J276 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV25A0A0B4J276 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV25A0A0B4J276 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC18.18■□□□□ 0.5
TRAV25A0A0B4J276 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV25A0A0B4J276 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV25A0A0B4J276 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV25A0A0B4J276 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV25A0A0B4J276 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC18.18■□□□□ 0.5
TRAV25A0A0B4J276 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC18.18■□□□□ 0.5
TRAV25A0A0B4J276 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV25A0A0B4J276 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV25A0A0B4J276 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV25A0A0B4J276 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV25A0A0B4J276 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC18.17■□□□□ 0.5
TRAV25A0A0B4J276 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV25A0A0B4J276 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV25A0A0B4J276 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV25A0A0B4J276 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
TRAV25A0A0B4J276 AC129492.7-201ENST00000622992 756 ntBASIC18.17■□□□□ 0.5
TRAV25A0A0B4J276 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV25A0A0B4J276 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV25A0A0B4J276 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV25A0A0B4J276 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC18.16■□□□□ 0.5
TRAV25A0A0B4J276 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV25A0A0B4J276 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
TRAV25A0A0B4J276 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV25A0A0B4J276 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV25A0A0B4J276 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV25A0A0B4J276 MIR6765-201ENST00000614092 87 ntBASIC18.15■□□□□ 0.5
TRAV25A0A0B4J276 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV25A0A0B4J276 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC18.14■□□□□ 0.49
TRAV25A0A0B4J276 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRAV25A0A0B4J276 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRAV25A0A0B4J276 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC18.14■□□□□ 0.49
TRAV25A0A0B4J276 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
TRAV25A0A0B4J276 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV25A0A0B4J276 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV25A0A0B4J276 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC18.13■□□□□ 0.49
TRAV25A0A0B4J276 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
TRAV25A0A0B4J276 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC18.13■□□□□ 0.49
TRAV25A0A0B4J276 PKM-203ENST00000389093 2279 ntTSL 5 BASIC18.12■□□□□ 0.49
TRAV25A0A0B4J276 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC18.12■□□□□ 0.49
TRAV25A0A0B4J276 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV25A0A0B4J276 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV25A0A0B4J276 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
TRAV25A0A0B4J276 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV25A0A0B4J276 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV25A0A0B4J276 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC18.12■□□□□ 0.49
TRAV25A0A0B4J276 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV25A0A0B4J276 TSPY13P-201ENST00000338964 914 ntBASIC18.12■□□□□ 0.49
TRAV25A0A0B4J276 DUX4L9-201ENST00000449051 1259 ntBASIC18.12■□□□□ 0.49
TRAV25A0A0B4J276 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC18.12■□□□□ 0.49
TRAV25A0A0B4J276 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC18.12■□□□□ 0.49
TRAV25A0A0B4J276 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV25A0A0B4J276 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC18.12■□□□□ 0.49
TRAV25A0A0B4J276 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
TRAV25A0A0B4J276 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
TRAV25A0A0B4J276 IDNK-203ENST00000405990 629 ntTSL 2 BASIC18.11■□□□□ 0.49
TRAV25A0A0B4J276 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC18.11■□□□□ 0.49
TRAV25A0A0B4J276 ATP5G2P3-201ENST00000429083 425 ntBASIC18.11■□□□□ 0.49
TRAV25A0A0B4J276 HYI-210ENST00000486909 905 ntTSL 5 BASIC18.11■□□□□ 0.49
TRAV25A0A0B4J276 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV25A0A0B4J276 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV25A0A0B4J276 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV25A0A0B4J276 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
TRAV25A0A0B4J276 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV25A0A0B4J276 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
TRAV25A0A0B4J276 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
TRAV25A0A0B4J276 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
TRAV25A0A0B4J276 AC004987.1-201ENST00000428627 508 ntBASIC18.1■□□□□ 0.49
TRAV25A0A0B4J276 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
TRAV25A0A0B4J276 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV25A0A0B4J276 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV25A0A0B4J276 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
TRAV25A0A0B4J276 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV25A0A0B4J276 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
TRAV25A0A0B4J276 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC18.09■□□□□ 0.49
TRAV25A0A0B4J276 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV25A0A0B4J276 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV25A0A0B4J276 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV25A0A0B4J276 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC18.08■□□□□ 0.49
TRAV25A0A0B4J276 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
TRAV25A0A0B4J276 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC18.08■□□□□ 0.48
TRAV25A0A0B4J276 SPCS2P3-201ENST00000500401 656 ntBASIC18.08■□□□□ 0.48
TRAV25A0A0B4J276 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRAV25A0A0B4J276 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRAV25A0A0B4J276 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC18.08■□□□□ 0.48
TRAV25A0A0B4J276 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAV25A0A0B4J276 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRAV25A0A0B4J276 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRAV25A0A0B4J276 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms