Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19.16■□□□□ 0.66
VTA1Q9NP79 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VTA1Q9NP79 AL353732.1-201ENST00000569618 1459 ntBASIC19.16■□□□□ 0.66
VTA1Q9NP79 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VTA1Q9NP79 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
VTA1Q9NP79 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19.16■□□□□ 0.66
VTA1Q9NP79 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
VTA1Q9NP79 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VTA1Q9NP79 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VTA1Q9NP79 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VTA1Q9NP79 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
VTA1Q9NP79 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VTA1Q9NP79 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VTA1Q9NP79 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VTA1Q9NP79 SLBP-205ENST00000488267 987 ntTSL 2 BASIC19.16■□□□□ 0.66
VTA1Q9NP79 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC19.16■□□□□ 0.66
VTA1Q9NP79 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC19.16■□□□□ 0.66
VTA1Q9NP79 INO80E-210ENST00000567705 880 ntTSL 3 BASIC19.16■□□□□ 0.66
VTA1Q9NP79 AL009183.1-201ENST00000603760 355 ntBASIC19.16■□□□□ 0.66
VTA1Q9NP79 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC19.16■□□□□ 0.66
VTA1Q9NP79 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VTA1Q9NP79 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
VTA1Q9NP79 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VTA1Q9NP79 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
VTA1Q9NP79 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VTA1Q9NP79 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
VTA1Q9NP79 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.16■□□□□ 0.66
VTA1Q9NP79 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VTA1Q9NP79 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC19.16■□□□□ 0.66
VTA1Q9NP79 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
VTA1Q9NP79 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VTA1Q9NP79 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VTA1Q9NP79 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VTA1Q9NP79 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VTA1Q9NP79 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VTA1Q9NP79 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VTA1Q9NP79 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VTA1Q9NP79 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
VTA1Q9NP79 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VTA1Q9NP79 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VTA1Q9NP79 HNRNPFP1-201ENST00000391730 1133 ntBASIC19.15■□□□□ 0.66
VTA1Q9NP79 HLA-DRB6-201ENST00000411500 1235 ntBASIC19.15■□□□□ 0.66
VTA1Q9NP79 HCG4-201ENST00000418983 998 ntBASIC19.15■□□□□ 0.66
VTA1Q9NP79 WDR53-203ENST00000429115 683 ntTSL 2 BASIC19.15■□□□□ 0.66
VTA1Q9NP79 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC19.15■□□□□ 0.66
VTA1Q9NP79 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC19.15■□□□□ 0.66
VTA1Q9NP79 AC067863.1-201ENST00000494933 530 ntBASIC19.15■□□□□ 0.66
VTA1Q9NP79 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC19.15■□□□□ 0.66
VTA1Q9NP79 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC19.15■□□□□ 0.66
VTA1Q9NP79 AC109635.5-201ENST00000533593 962 ntBASIC19.15■□□□□ 0.66
VTA1Q9NP79 DUX4L17-201ENST00000557360 1267 ntBASIC19.15■□□□□ 0.66
VTA1Q9NP79 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC19.15■□□□□ 0.66
VTA1Q9NP79 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
VTA1Q9NP79 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC19.15■□□□□ 0.66
VTA1Q9NP79 AL096865.1-201ENST00000606796 927 ntBASIC19.15■□□□□ 0.66
VTA1Q9NP79 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
VTA1Q9NP79 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
VTA1Q9NP79 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VTA1Q9NP79 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VTA1Q9NP79 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC19.15■□□□□ 0.66
VTA1Q9NP79 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VTA1Q9NP79 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VTA1Q9NP79 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VTA1Q9NP79 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
VTA1Q9NP79 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
VTA1Q9NP79 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC19.14■□□□□ 0.66
VTA1Q9NP79 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC19.14■□□□□ 0.66
VTA1Q9NP79 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
VTA1Q9NP79 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC19.14■□□□□ 0.65
VTA1Q9NP79 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VTA1Q9NP79 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.14■□□□□ 0.65
VTA1Q9NP79 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC19.14■□□□□ 0.65
VTA1Q9NP79 BCL2-203ENST00000589955 5011 ntBASIC19.14■□□□□ 0.65
VTA1Q9NP79 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
VTA1Q9NP79 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
VTA1Q9NP79 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC19.14■□□□□ 0.65
VTA1Q9NP79 CD99-202ENST00000381180 530 ntTSL 2 BASIC19.14■□□□□ 0.65
VTA1Q9NP79 KRT18P32-201ENST00000424695 1287 ntBASIC19.14■□□□□ 0.65
VTA1Q9NP79 BCRP1-201ENST00000444246 691 ntBASIC19.14■□□□□ 0.65
VTA1Q9NP79 AC069335.1-201ENST00000489972 472 ntBASIC19.14■□□□□ 0.65
VTA1Q9NP79 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC19.14■□□□□ 0.65
VTA1Q9NP79 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
VTA1Q9NP79 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
VTA1Q9NP79 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC19.14■□□□□ 0.65
VTA1Q9NP79 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VTA1Q9NP79 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VTA1Q9NP79 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VTA1Q9NP79 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
VTA1Q9NP79 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC19.14■□□□□ 0.65
VTA1Q9NP79 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VTA1Q9NP79 EGFEM1P-202ENST00000431685 1563 ntBASIC19.14■□□□□ 0.65
VTA1Q9NP79 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VTA1Q9NP79 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VTA1Q9NP79 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
VTA1Q9NP79 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.65
VTA1Q9NP79 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC19.14■□□□□ 0.65
VTA1Q9NP79 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VTA1Q9NP79 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VTA1Q9NP79 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC19.13■□□□□ 0.65
VTA1Q9NP79 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms