Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
CCSER1Q9C0I3 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCSER1Q9C0I3 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
CCSER1Q9C0I3 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC19.26■□□□□ 0.67
CCSER1Q9C0I3 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC19.26■□□□□ 0.67
CCSER1Q9C0I3 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCSER1Q9C0I3 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CCSER1Q9C0I3 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCSER1Q9C0I3 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCSER1Q9C0I3 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 IRF8-202ENST00000562492 946 ntTSL 3 BASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 AC021087.4-201ENST00000563761 564 ntBASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 AC139887.3-201ENST00000568585 713 ntBASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 PAM16-208ENST00000573553 722 ntTSL 2 BASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 AC004706.3-202ENST00000621574 984 ntBASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC19.25■□□□□ 0.67
CCSER1Q9C0I3 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCSER1Q9C0I3 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCSER1Q9C0I3 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
CCSER1Q9C0I3 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCSER1Q9C0I3 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CCSER1Q9C0I3 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC19.24■□□□□ 0.67
CCSER1Q9C0I3 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC19.24■□□□□ 0.67
CCSER1Q9C0I3 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCSER1Q9C0I3 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
CCSER1Q9C0I3 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCSER1Q9C0I3 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCSER1Q9C0I3 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC19.24■□□□□ 0.67
CCSER1Q9C0I3 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC19.24■□□□□ 0.67
CCSER1Q9C0I3 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC19.24■□□□□ 0.67
CCSER1Q9C0I3 AC025062.2-201ENST00000605477 670 ntBASIC19.24■□□□□ 0.67
CCSER1Q9C0I3 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCSER1Q9C0I3 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCSER1Q9C0I3 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCSER1Q9C0I3 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
CCSER1Q9C0I3 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC19.24■□□□□ 0.67
CCSER1Q9C0I3 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC19.24■□□□□ 0.67
CCSER1Q9C0I3 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCSER1Q9C0I3 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CCSER1Q9C0I3 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC19.24■□□□□ 0.67
CCSER1Q9C0I3 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC19.24■□□□□ 0.67
CCSER1Q9C0I3 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCSER1Q9C0I3 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC19.23■□□□□ 0.67
CCSER1Q9C0I3 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCSER1Q9C0I3 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCSER1Q9C0I3 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCSER1Q9C0I3 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
CCSER1Q9C0I3 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCSER1Q9C0I3 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCSER1Q9C0I3 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCSER1Q9C0I3 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC19.23■□□□□ 0.67
CCSER1Q9C0I3 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC19.23■□□□□ 0.67
CCSER1Q9C0I3 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC19.23■□□□□ 0.67
CCSER1Q9C0I3 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC19.23■□□□□ 0.67
CCSER1Q9C0I3 MSRA-206ENST00000521209 814 ntTSL 3 BASIC19.23■□□□□ 0.67
CCSER1Q9C0I3 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC19.23■□□□□ 0.67
CCSER1Q9C0I3 AL691432.3-201ENST00000621860 400 ntBASIC19.23■□□□□ 0.67
CCSER1Q9C0I3 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCSER1Q9C0I3 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC19.23■□□□□ 0.67
CCSER1Q9C0I3 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
CCSER1Q9C0I3 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCSER1Q9C0I3 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCSER1Q9C0I3 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCSER1Q9C0I3 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms