Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 Telomerase-vert.1-201ENST00000363312 438 ntBASIC15.47■□□□□ 0.07
CCDC58Q4VC31 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 MIR718-201ENST00000390190 70 ntBASIC15.47■□□□□ 0.07
CCDC58Q4VC31 HMGA1P5-201ENST00000412453 271 ntBASIC15.47■□□□□ 0.07
CCDC58Q4VC31 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 AC034232.1-201ENST00000506026 1064 ntBASIC15.47■□□□□ 0.07
CCDC58Q4VC31 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC58Q4VC31 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
CCDC58Q4VC31 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC58Q4VC31 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC15.46■□□□□ 0.07
CCDC58Q4VC31 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC15.46■□□□□ 0.07
CCDC58Q4VC31 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC58Q4VC31 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC58Q4VC31 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC15.46■□□□□ 0.07
CCDC58Q4VC31 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC58Q4VC31 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC58Q4VC31 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC58Q4VC31 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC58Q4VC31 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC15.46■□□□□ 0.07
CCDC58Q4VC31 DDT-203ENST00000403754 569 ntTSL 3 BASIC15.46■□□□□ 0.07
CCDC58Q4VC31 DDT-206ENST00000430101 573 ntTSL 2 BASIC15.46■□□□□ 0.07
CCDC58Q4VC31 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC58Q4VC31 AC002558.1-201ENST00000488906 803 ntBASIC15.46■□□□□ 0.07
CCDC58Q4VC31 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC15.46■□□□□ 0.07
CCDC58Q4VC31 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC15.46■□□□□ 0.07
CCDC58Q4VC31 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC15.46■□□□□ 0.07
CCDC58Q4VC31 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC58Q4VC31 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC15.46■□□□□ 0.07
CCDC58Q4VC31 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC58Q4VC31 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC58Q4VC31 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC58Q4VC31 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC58Q4VC31 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC58Q4VC31 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
CCDC58Q4VC31 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC58Q4VC31 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC15.46■□□□□ 0.07
CCDC58Q4VC31 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC58Q4VC31 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.06
CCDC58Q4VC31 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
CCDC58Q4VC31 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
CCDC58Q4VC31 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
CCDC58Q4VC31 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.06
CCDC58Q4VC31 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC15.46■□□□□ 0.06
CCDC58Q4VC31 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
CCDC58Q4VC31 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
CCDC58Q4VC31 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC58Q4VC31 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC58Q4VC31 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC58Q4VC31 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
CCDC58Q4VC31 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC58Q4VC31 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC58Q4VC31 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC58Q4VC31 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC15.45■□□□□ 0.06
CCDC58Q4VC31 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC15.45■□□□□ 0.06
CCDC58Q4VC31 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC58Q4VC31 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC58Q4VC31 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
CCDC58Q4VC31 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
CCDC58Q4VC31 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC58Q4VC31 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
CCDC58Q4VC31 INGX-201ENST00000359239 846 ntBASIC15.45■□□□□ 0.06
CCDC58Q4VC31 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC58Q4VC31 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC15.45■□□□□ 0.06
CCDC58Q4VC31 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC58Q4VC31 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC15.45■□□□□ 0.06
CCDC58Q4VC31 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC15.45■□□□□ 0.06
CCDC58Q4VC31 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC15.45■□□□□ 0.06
CCDC58Q4VC31 TSPY20P-201ENST00000450910 630 ntBASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms