Protein–RNA interactions for Protein: P78415

IRX3, Iroquois-class homeodomain protein IRX-3, humanhuman

Predicted RBP Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IRX3P78415 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
IRX3P78415 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
IRX3P78415 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
IRX3P78415 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
IRX3P78415 STOM-202ENST00000347359 870 ntTSL 2 BASIC20.04■□□□□ 0.8
IRX3P78415 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
IRX3P78415 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
IRX3P78415 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
IRX3P78415 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
IRX3P78415 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
IRX3P78415 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC20.04■□□□□ 0.8
IRX3P78415 AC011467.4-201ENST00000594891 528 ntBASIC20.04■□□□□ 0.8
IRX3P78415 AC092364.2-202ENST00000597012 1073 ntBASIC20.04■□□□□ 0.8
IRX3P78415 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
IRX3P78415 MED16-214ENST00000617672 554 ntTSL 5 BASIC20.04■□□□□ 0.8
IRX3P78415 AC092902.6-201ENST00000641783 218 ntBASIC20.04■□□□□ 0.8
IRX3P78415 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
IRX3P78415 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
IRX3P78415 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
IRX3P78415 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
IRX3P78415 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
IRX3P78415 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC20.04■□□□□ 0.8
IRX3P78415 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC20.04■□□□□ 0.8
IRX3P78415 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC20.04■□□□□ 0.8
IRX3P78415 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
IRX3P78415 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
IRX3P78415 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC20.04■□□□□ 0.8
IRX3P78415 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
IRX3P78415 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
IRX3P78415 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC20.03■□□□□ 0.8
IRX3P78415 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
IRX3P78415 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
IRX3P78415 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
IRX3P78415 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
IRX3P78415 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
IRX3P78415 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
IRX3P78415 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
IRX3P78415 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
IRX3P78415 NABP1-203ENST00000409510 843 ntTSL 5 BASIC20.03■□□□□ 0.8
IRX3P78415 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
IRX3P78415 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC20.03■□□□□ 0.8
IRX3P78415 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC20.03■□□□□ 0.8
IRX3P78415 AC004449.1-201ENST00000564240 433 ntBASIC20.03■□□□□ 0.8
IRX3P78415 AL513210.1-201ENST00000629608 234 ntBASIC20.03■□□□□ 0.8
IRX3P78415 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
IRX3P78415 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
IRX3P78415 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
IRX3P78415 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
IRX3P78415 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
IRX3P78415 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC20.03■□□□□ 0.8
IRX3P78415 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC20.03■□□□□ 0.8
IRX3P78415 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC20.03■□□□□ 0.8
IRX3P78415 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
IRX3P78415 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
IRX3P78415 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
IRX3P78415 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC20.02■□□□□ 0.8
IRX3P78415 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
IRX3P78415 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
IRX3P78415 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
IRX3P78415 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC20.02■□□□□ 0.8
IRX3P78415 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
IRX3P78415 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC20.02■□□□□ 0.8
IRX3P78415 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
IRX3P78415 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
IRX3P78415 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC20.02■□□□□ 0.8
IRX3P78415 FAM8A3P-201ENST00000427218 844 ntBASIC20.02■□□□□ 0.8
IRX3P78415 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC20.02■□□□□ 0.8
IRX3P78415 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
IRX3P78415 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC20.02■□□□□ 0.8
IRX3P78415 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC20.02■□□□□ 0.8
IRX3P78415 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
IRX3P78415 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC20.02■□□□□ 0.8
IRX3P78415 RNF34-208ENST00000555076 593 ntTSL 3 BASIC20.02■□□□□ 0.8
IRX3P78415 TK1-204ENST00000590430 683 ntTSL 3 BASIC20.02■□□□□ 0.8
IRX3P78415 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
IRX3P78415 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC20.02■□□□□ 0.8
IRX3P78415 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
IRX3P78415 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC20.02■□□□□ 0.8
IRX3P78415 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
IRX3P78415 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
IRX3P78415 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC20.02■□□□□ 0.8
IRX3P78415 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
IRX3P78415 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
IRX3P78415 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
IRX3P78415 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
IRX3P78415 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
IRX3P78415 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.79
IRX3P78415 STK4-201ENST00000372801 2038 ntTSL 2 BASIC20.02■□□□□ 0.79
IRX3P78415 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC20.02■□□□□ 0.79
IRX3P78415 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
IRX3P78415 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC20.02■□□□□ 0.79
IRX3P78415 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
IRX3P78415 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC20.02■□□□□ 0.79
IRX3P78415 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
IRX3P78415 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
IRX3P78415 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
IRX3P78415 AC018470.1-201ENST00000624790 3129 ntBASIC20.01■□□□□ 0.79
IRX3P78415 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
IRX3P78415 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
IRX3P78415 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms