Protein–RNA interactions for Protein: P43307

SSR1, Translocon-associated protein subunit alpha, humanhuman

Known RBP Predictions only

Length 286 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSR1P43307 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC18.39■□□□□ 0.53
SSR1P43307 RN7SL606P-201ENST00000472779 293 ntBASIC18.39■□□□□ 0.53
SSR1P43307 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
SSR1P43307 IGHV3-52-201ENST00000519770 353 ntBASIC18.39■□□□□ 0.53
SSR1P43307 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SSR1P43307 AC109462.3-201ENST00000573934 613 ntBASIC18.39■□□□□ 0.53
SSR1P43307 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC18.39■□□□□ 0.53
SSR1P43307 AL121956.5-201ENST00000625261 221 ntBASIC18.39■□□□□ 0.53
SSR1P43307 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.39■□□□□ 0.53
SSR1P43307 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SSR1P43307 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SSR1P43307 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SSR1P43307 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SSR1P43307 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
SSR1P43307 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SSR1P43307 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
SSR1P43307 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SSR1P43307 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SSR1P43307 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC18.39■□□□□ 0.53
SSR1P43307 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC18.39■□□□□ 0.53
SSR1P43307 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC18.38■□□□□ 0.53
SSR1P43307 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SSR1P43307 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SSR1P43307 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
SSR1P43307 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SSR1P43307 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SSR1P43307 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SSR1P43307 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SSR1P43307 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SSR1P43307 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SSR1P43307 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SSR1P43307 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SSR1P43307 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SSR1P43307 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SSR1P43307 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SSR1P43307 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC18.38■□□□□ 0.53
SSR1P43307 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC18.38■□□□□ 0.53
SSR1P43307 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SSR1P43307 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SSR1P43307 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.38■□□□□ 0.53
SSR1P43307 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC18.38■□□□□ 0.53
SSR1P43307 AL121672.3-201ENST00000608644 468 ntBASIC18.38■□□□□ 0.53
SSR1P43307 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SSR1P43307 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SSR1P43307 AC005332.1-201ENST00000577698 1310 ntBASIC18.38■□□□□ 0.53
SSR1P43307 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.38■□□□□ 0.53
SSR1P43307 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SSR1P43307 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SSR1P43307 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC18.38■□□□□ 0.53
SSR1P43307 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
SSR1P43307 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SSR1P43307 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SSR1P43307 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC18.38■□□□□ 0.53
SSR1P43307 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
SSR1P43307 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SSR1P43307 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC18.37■□□□□ 0.53
SSR1P43307 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SSR1P43307 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SSR1P43307 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SSR1P43307 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SSR1P43307 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC18.37■□□□□ 0.53
SSR1P43307 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
SSR1P43307 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
SSR1P43307 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SSR1P43307 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SSR1P43307 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SSR1P43307 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SSR1P43307 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SSR1P43307 VENTXP7-201ENST00000475503 772 ntBASIC18.37■□□□□ 0.53
SSR1P43307 AC002558.1-201ENST00000488906 803 ntBASIC18.37■□□□□ 0.53
SSR1P43307 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC18.37■□□□□ 0.53
SSR1P43307 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.37■□□□□ 0.53
SSR1P43307 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
SSR1P43307 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC18.37■□□□□ 0.53
SSR1P43307 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
SSR1P43307 AC016396.2-201ENST00000562575 1417 ntBASIC18.37■□□□□ 0.53
SSR1P43307 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SSR1P43307 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
SSR1P43307 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SSR1P43307 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SSR1P43307 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.37■□□□□ 0.53
SSR1P43307 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SSR1P43307 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.37■□□□□ 0.53
SSR1P43307 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC18.37■□□□□ 0.53
SSR1P43307 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SSR1P43307 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SSR1P43307 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
SSR1P43307 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC18.36■□□□□ 0.53
SSR1P43307 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SSR1P43307 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SSR1P43307 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SSR1P43307 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SSR1P43307 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SSR1P43307 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
SSR1P43307 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SSR1P43307 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SSR1P43307 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SSR1P43307 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SSR1P43307 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
SSR1P43307 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms