Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VPS28Q9UK41 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VPS28Q9UK41 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS28Q9UK41 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS28Q9UK41 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.79■□□□□ 0.44
VPS28Q9UK41 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.79■□□□□ 0.44
VPS28Q9UK41 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS28Q9UK41 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
VPS28Q9UK41 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS28Q9UK41 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS28Q9UK41 PCDHA12-202ENST00000613593 2588 ntBASIC17.79■□□□□ 0.44
VPS28Q9UK41 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
VPS28Q9UK41 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS28Q9UK41 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VPS28Q9UK41 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
VPS28Q9UK41 LYSMD4-203ENST00000378904 2122 ntBASIC17.78■□□□□ 0.44
VPS28Q9UK41 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.78■□□□□ 0.44
VPS28Q9UK41 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS28Q9UK41 AC012313.1-201ENST00000593393 3059 ntBASIC17.78■□□□□ 0.44
VPS28Q9UK41 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS28Q9UK41 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VPS28Q9UK41 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.78■□□□□ 0.44
VPS28Q9UK41 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS28Q9UK41 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.78■□□□□ 0.44
VPS28Q9UK41 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS28Q9UK41 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.78■□□□□ 0.44
VPS28Q9UK41 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VPS28Q9UK41 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.78■□□□□ 0.44
VPS28Q9UK41 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC17.78■□□□□ 0.44
VPS28Q9UK41 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS28Q9UK41 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.78■□□□□ 0.44
VPS28Q9UK41 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.78■□□□□ 0.44
VPS28Q9UK41 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.78■□□□□ 0.44
VPS28Q9UK41 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
VPS28Q9UK41 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC17.78■□□□□ 0.44
VPS28Q9UK41 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.78■□□□□ 0.44
VPS28Q9UK41 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC17.78■□□□□ 0.44
VPS28Q9UK41 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
VPS28Q9UK41 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.78■□□□□ 0.44
VPS28Q9UK41 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
VPS28Q9UK41 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS28Q9UK41 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
VPS28Q9UK41 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
VPS28Q9UK41 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VPS28Q9UK41 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS28Q9UK41 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS28Q9UK41 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
VPS28Q9UK41 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
VPS28Q9UK41 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.78■□□□□ 0.44
VPS28Q9UK41 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.77■□□□□ 0.44
VPS28Q9UK41 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS28Q9UK41 AC108860.2-201ENST00000562760 2183 ntBASIC17.77■□□□□ 0.44
VPS28Q9UK41 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VPS28Q9UK41 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.77■□□□□ 0.44
VPS28Q9UK41 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS28Q9UK41 AP002414.3-201ENST00000589352 1468 ntBASIC17.77■□□□□ 0.44
VPS28Q9UK41 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS28Q9UK41 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS28Q9UK41 CSF3-203ENST00000394148 622 ntTSL 3 BASIC17.77■□□□□ 0.44
VPS28Q9UK41 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS28Q9UK41 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC17.77■□□□□ 0.44
VPS28Q9UK41 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC17.77■□□□□ 0.44
VPS28Q9UK41 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS28Q9UK41 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
VPS28Q9UK41 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.77■□□□□ 0.44
VPS28Q9UK41 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.77■□□□□ 0.44
VPS28Q9UK41 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC17.77■□□□□ 0.44
VPS28Q9UK41 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC17.77■□□□□ 0.44
VPS28Q9UK41 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC17.77■□□□□ 0.44
VPS28Q9UK41 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.77■□□□□ 0.44
VPS28Q9UK41 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC17.77■□□□□ 0.44
VPS28Q9UK41 MIR1199-201ENST00000621445 119 ntBASIC17.77■□□□□ 0.44
VPS28Q9UK41 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.77■□□□□ 0.44
VPS28Q9UK41 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
VPS28Q9UK41 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.43
VPS28Q9UK41 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
VPS28Q9UK41 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
VPS28Q9UK41 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.77■□□□□ 0.43
VPS28Q9UK41 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
VPS28Q9UK41 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
VPS28Q9UK41 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
VPS28Q9UK41 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS28Q9UK41 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VPS28Q9UK41 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VPS28Q9UK41 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VPS28Q9UK41 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS28Q9UK41 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS28Q9UK41 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.76■□□□□ 0.43
VPS28Q9UK41 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
VPS28Q9UK41 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS28Q9UK41 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS28Q9UK41 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.76■□□□□ 0.43
VPS28Q9UK41 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VPS28Q9UK41 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
VPS28Q9UK41 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VPS28Q9UK41 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS28Q9UK41 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.76■□□□□ 0.43
VPS28Q9UK41 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.76■□□□□ 0.43
VPS28Q9UK41 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.76■□□□□ 0.43
VPS28Q9UK41 AC098831.1-202ENST00000438821 336 ntBASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms