Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC18.5■□□□□ 0.55
SIX2Q9NPC8 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC18.5■□□□□ 0.55
SIX2Q9NPC8 HCG4P8-203ENST00000443049 980 ntBASIC18.5■□□□□ 0.55
SIX2Q9NPC8 PRYP5-201ENST00000451909 266 ntBASIC18.5■□□□□ 0.55
SIX2Q9NPC8 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC18.5■□□□□ 0.55
SIX2Q9NPC8 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SIX2Q9NPC8 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC18.5■□□□□ 0.55
SIX2Q9NPC8 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC18.5■□□□□ 0.55
SIX2Q9NPC8 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC18.5■□□□□ 0.55
SIX2Q9NPC8 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
SIX2Q9NPC8 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SIX2Q9NPC8 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC18.5■□□□□ 0.55
SIX2Q9NPC8 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC18.5■□□□□ 0.55
SIX2Q9NPC8 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SIX2Q9NPC8 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
SIX2Q9NPC8 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC18.5■□□□□ 0.55
SIX2Q9NPC8 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SIX2Q9NPC8 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SIX2Q9NPC8 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 AC092171.3-201ENST00000610122 2651 ntBASIC18.49■□□□□ 0.55
SIX2Q9NPC8 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 NKAPP1-205ENST00000585790 367 ntBASIC18.49■□□□□ 0.55
SIX2Q9NPC8 AL353135.1-201ENST00000606729 504 ntBASIC18.49■□□□□ 0.55
SIX2Q9NPC8 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SIX2Q9NPC8 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 AP002414.1-201ENST00000391405 1147 ntBASIC18.48■□□□□ 0.55
SIX2Q9NPC8 TSPY19P-201ENST00000418461 509 ntBASIC18.48■□□□□ 0.55
SIX2Q9NPC8 TSPY18P-201ENST00000441642 509 ntBASIC18.48■□□□□ 0.55
SIX2Q9NPC8 KRT18P31-201ENST00000506277 1292 ntBASIC18.48■□□□□ 0.55
SIX2Q9NPC8 MIR3652-201ENST00000579335 131 ntBASIC18.48■□□□□ 0.55
SIX2Q9NPC8 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 AC064862.7-201ENST00000604520 867 ntBASIC18.48■□□□□ 0.55
SIX2Q9NPC8 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC18.48■□□□□ 0.55
SIX2Q9NPC8 AL590787.1-201ENST00000568856 1315 ntBASIC18.48■□□□□ 0.55
SIX2Q9NPC8 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SIX2Q9NPC8 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
SIX2Q9NPC8 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX2Q9NPC8 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
SIX2Q9NPC8 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX2Q9NPC8 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms