Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 AC005915.1-201ENST00000624912 2018 ntBASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 AL121761.2-201ENST00000598007 1648 ntBASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 AL031133.1-201ENST00000406807 723 ntBASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 AC109462.3-201ENST00000573934 613 ntBASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 AC097374.2-201ENST00000618617 1306 ntBASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM56Q9BRZ2 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
TRIM56Q9BRZ2 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
TRIM56Q9BRZ2 FLJ38576-201ENST00000623820 2459 ntBASIC17.64■□□□□ 0.42
TRIM56Q9BRZ2 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 AL138831.2-201ENST00000606564 490 ntBASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 AL353801.3-201ENST00000609898 542 ntBASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.64■□□□□ 0.41
TRIM56Q9BRZ2 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 MED25-212ENST00000618715 1467 ntTSL 5 BASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 AC002558.1-201ENST00000488906 803 ntBASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 GUSBP12-201ENST00000513727 720 ntBASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 AL136038.3-201ENST00000561909 1096 ntBASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 AP005901.3-202ENST00000581653 237 ntBASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms