Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
VMP1Q96GC9 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.6■□□□□ 0.25
VMP1Q96GC9 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VMP1Q96GC9 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VMP1Q96GC9 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.6■□□□□ 0.25
VMP1Q96GC9 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VMP1Q96GC9 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
VMP1Q96GC9 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VMP1Q96GC9 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VMP1Q96GC9 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VMP1Q96GC9 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
VMP1Q96GC9 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
VMP1Q96GC9 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.59■□□□□ 0.25
VMP1Q96GC9 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
VMP1Q96GC9 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
VMP1Q96GC9 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
VMP1Q96GC9 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.59■□□□□ 0.25
VMP1Q96GC9 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.59■□□□□ 0.25
VMP1Q96GC9 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VMP1Q96GC9 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VMP1Q96GC9 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VMP1Q96GC9 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VMP1Q96GC9 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VMP1Q96GC9 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VMP1Q96GC9 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VMP1Q96GC9 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.59■□□□□ 0.25
VMP1Q96GC9 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VMP1Q96GC9 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.59■□□□□ 0.25
VMP1Q96GC9 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.59■□□□□ 0.25
VMP1Q96GC9 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VMP1Q96GC9 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.59■□□□□ 0.25
VMP1Q96GC9 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VMP1Q96GC9 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.59■□□□□ 0.25
VMP1Q96GC9 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.59■□□□□ 0.25
VMP1Q96GC9 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC16.59■□□□□ 0.25
VMP1Q96GC9 TBCB-205ENST00000585746 875 ntTSL 3 BASIC16.59■□□□□ 0.25
VMP1Q96GC9 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VMP1Q96GC9 IFNL4P1-201ENST00000607083 540 ntBASIC16.59■□□□□ 0.25
VMP1Q96GC9 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC16.59■□□□□ 0.25
VMP1Q96GC9 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VMP1Q96GC9 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.59■□□□□ 0.25
VMP1Q96GC9 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VMP1Q96GC9 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VMP1Q96GC9 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC16.59■□□□□ 0.25
VMP1Q96GC9 TP73-AS1-210ENST00000637775 1455 ntBASIC16.59■□□□□ 0.25
VMP1Q96GC9 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VMP1Q96GC9 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VMP1Q96GC9 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
VMP1Q96GC9 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC16.59■□□□□ 0.25
VMP1Q96GC9 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VMP1Q96GC9 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
VMP1Q96GC9 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VMP1Q96GC9 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VMP1Q96GC9 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VMP1Q96GC9 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC16.59■□□□□ 0.25
VMP1Q96GC9 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VMP1Q96GC9 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.59■□□□□ 0.25
VMP1Q96GC9 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VMP1Q96GC9 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.58■□□□□ 0.25
VMP1Q96GC9 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
VMP1Q96GC9 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
VMP1Q96GC9 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
VMP1Q96GC9 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
VMP1Q96GC9 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
VMP1Q96GC9 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
VMP1Q96GC9 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VMP1Q96GC9 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
VMP1Q96GC9 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.58■□□□□ 0.24
VMP1Q96GC9 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.58■□□□□ 0.24
VMP1Q96GC9 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.58■□□□□ 0.24
VMP1Q96GC9 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VMP1Q96GC9 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.58■□□□□ 0.24
VMP1Q96GC9 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.58■□□□□ 0.24
VMP1Q96GC9 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.58■□□□□ 0.24
VMP1Q96GC9 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.58■□□□□ 0.24
VMP1Q96GC9 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
VMP1Q96GC9 AC116407.2-201ENST00000613639 860 ntBASIC16.58■□□□□ 0.24
VMP1Q96GC9 AC097374.2-201ENST00000618617 1306 ntBASIC16.58■□□□□ 0.24
VMP1Q96GC9 KRT8P47-201ENST00000604727 1398 ntBASIC16.58■□□□□ 0.24
VMP1Q96GC9 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VMP1Q96GC9 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
VMP1Q96GC9 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VMP1Q96GC9 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.58■□□□□ 0.24
VMP1Q96GC9 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
VMP1Q96GC9 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.58■□□□□ 0.24
VMP1Q96GC9 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC16.58■□□□□ 0.24
VMP1Q96GC9 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VMP1Q96GC9 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.58■□□□□ 0.24
VMP1Q96GC9 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
VMP1Q96GC9 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VMP1Q96GC9 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VMP1Q96GC9 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VMP1Q96GC9 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.58■□□□□ 0.24
VMP1Q96GC9 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.58■□□□□ 0.24
VMP1Q96GC9 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VMP1Q96GC9 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VMP1Q96GC9 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VMP1Q96GC9 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
VMP1Q96GC9 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.58■□□□□ 0.24
VMP1Q96GC9 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms