Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LDB1Q86U70 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LDB1Q86U70 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC17.26■□□□□ 0.35
LDB1Q86U70 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LDB1Q86U70 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LDB1Q86U70 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LDB1Q86U70 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
LDB1Q86U70 AC106886.4-201ENST00000623557 2502 ntBASIC17.25■□□□□ 0.35
LDB1Q86U70 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.25■□□□□ 0.35
LDB1Q86U70 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LDB1Q86U70 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
LDB1Q86U70 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDB1Q86U70 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.25■□□□□ 0.35
LDB1Q86U70 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDB1Q86U70 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.25■□□□□ 0.35
LDB1Q86U70 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.25■□□□□ 0.35
LDB1Q86U70 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDB1Q86U70 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LDB1Q86U70 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDB1Q86U70 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDB1Q86U70 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC17.25■□□□□ 0.35
LDB1Q86U70 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.25■□□□□ 0.35
LDB1Q86U70 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC17.25■□□□□ 0.35
LDB1Q86U70 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC17.25■□□□□ 0.35
LDB1Q86U70 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC17.25■□□□□ 0.35
LDB1Q86U70 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC17.25■□□□□ 0.35
LDB1Q86U70 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDB1Q86U70 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDB1Q86U70 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.25■□□□□ 0.35
LDB1Q86U70 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
LDB1Q86U70 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
LDB1Q86U70 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDB1Q86U70 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LDB1Q86U70 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
LDB1Q86U70 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LDB1Q86U70 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB1Q86U70 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB1Q86U70 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
LDB1Q86U70 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB1Q86U70 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
LDB1Q86U70 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB1Q86U70 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.24■□□□□ 0.35
LDB1Q86U70 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB1Q86U70 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB1Q86U70 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB1Q86U70 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LDB1Q86U70 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
LDB1Q86U70 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB1Q86U70 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB1Q86U70 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB1Q86U70 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB1Q86U70 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB1Q86U70 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB1Q86U70 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.24■□□□□ 0.35
LDB1Q86U70 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC17.24■□□□□ 0.35
LDB1Q86U70 KRT16P4-201ENST00000453883 522 ntBASIC17.24■□□□□ 0.35
LDB1Q86U70 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.24■□□□□ 0.35
LDB1Q86U70 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC17.24■□□□□ 0.35
LDB1Q86U70 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC17.24■□□□□ 0.35
LDB1Q86U70 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC17.24■□□□□ 0.35
LDB1Q86U70 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LDB1Q86U70 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC17.24■□□□□ 0.35
LDB1Q86U70 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.24■□□□□ 0.35
LDB1Q86U70 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LDB1Q86U70 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
LDB1Q86U70 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
LDB1Q86U70 AC092068.3-201ENST00000587894 2016 ntBASIC17.24■□□□□ 0.35
LDB1Q86U70 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB1Q86U70 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB1Q86U70 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB1Q86U70 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LDB1Q86U70 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.24■□□□□ 0.35
LDB1Q86U70 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LDB1Q86U70 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB1Q86U70 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
LDB1Q86U70 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
LDB1Q86U70 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.23■□□□□ 0.35
LDB1Q86U70 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.23■□□□□ 0.35
LDB1Q86U70 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDB1Q86U70 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDB1Q86U70 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LDB1Q86U70 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LDB1Q86U70 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
LDB1Q86U70 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDB1Q86U70 AC005915.1-201ENST00000624912 2018 ntBASIC17.23■□□□□ 0.35
LDB1Q86U70 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDB1Q86U70 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LDB1Q86U70 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDB1Q86U70 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDB1Q86U70 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDB1Q86U70 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDB1Q86U70 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDB1Q86U70 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.23■□□□□ 0.35
LDB1Q86U70 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDB1Q86U70 SPDYE21P-201ENST00000413323 827 ntBASIC17.23■□□□□ 0.35
LDB1Q86U70 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LDB1Q86U70 SRP19-202ENST00000445150 833 ntTSL 2 BASIC17.23■□□□□ 0.35
LDB1Q86U70 NUS1P1-201ENST00000446295 882 ntBASIC17.23■□□□□ 0.35
LDB1Q86U70 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.23■□□□□ 0.35
LDB1Q86U70 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms