Protein–RNA interactions for Protein: Q86TL0

ATG4D, Cysteine protease ATG4D, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4DQ86TL0 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ATG4DQ86TL0 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
ATG4DQ86TL0 NF2-208ENST00000403435 2568 ntTSL 5 BASIC15.67■□□□□ 0.1
ATG4DQ86TL0 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ATG4DQ86TL0 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
ATG4DQ86TL0 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC15.67■□□□□ 0.1
ATG4DQ86TL0 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 FDX1P1-201ENST00000449115 551 ntBASIC15.66■□□□□ 0.1
ATG4DQ86TL0 AC106795.1-205ENST00000512851 1056 ntBASIC15.66■□□□□ 0.1
ATG4DQ86TL0 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 COPE-211ENST00000600932 1144 ntTSL 5 BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 AC104692.2-201ENST00000603054 253 ntBASIC15.66■□□□□ 0.1
ATG4DQ86TL0 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4DQ86TL0 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 GPR89P-201ENST00000407924 1495 ntBASIC15.65■□□□□ 0.1
ATG4DQ86TL0 AC004817.3-201ENST00000602957 2129 ntBASIC15.65■□□□□ 0.1
ATG4DQ86TL0 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 LSM5-204ENST00000409909 740 ntTSL 2 BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 STX3-203ENST00000529177 1571 ntTSL 2 BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 NKILA-202ENST00000614771 2598 ntBASIC15.65■□□□□ 0.1
ATG4DQ86TL0 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC15.65■□□□□ 0.1
ATG4DQ86TL0 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC15.64■□□□□ 0.1
ATG4DQ86TL0 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
ATG4DQ86TL0 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC15.64■□□□□ 0.09
ATG4DQ86TL0 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC15.64■□□□□ 0.09
ATG4DQ86TL0 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
ATG4DQ86TL0 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
ATG4DQ86TL0 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC15.64■□□□□ 0.09
ATG4DQ86TL0 AC097637.2-201ENST00000624096 1997 ntBASIC15.64■□□□□ 0.09
ATG4DQ86TL0 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC15.64■□□□□ 0.09
ATG4DQ86TL0 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC15.64■□□□□ 0.09
ATG4DQ86TL0 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms