Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
VPS13DQ5THJ4 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
VPS13DQ5THJ4 BICD1-207ENST00000551848 1962 ntBASIC11.45□□□□□ -0.58
VPS13DQ5THJ4 KRT18P55-202ENST00000578578 1546 ntBASIC11.45□□□□□ -0.58
VPS13DQ5THJ4 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
VPS13DQ5THJ4 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
VPS13DQ5THJ4 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
VPS13DQ5THJ4 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC11.45□□□□□ -0.58
VPS13DQ5THJ4 MTRF1LP2-201ENST00000506027 1122 ntBASIC11.45□□□□□ -0.58
VPS13DQ5THJ4 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC11.45□□□□□ -0.58
VPS13DQ5THJ4 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC11.45□□□□□ -0.58
VPS13DQ5THJ4 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
VPS13DQ5THJ4 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC11.45□□□□□ -0.58
VPS13DQ5THJ4 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
VPS13DQ5THJ4 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC11.45□□□□□ -0.58
VPS13DQ5THJ4 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC11.45□□□□□ -0.58
VPS13DQ5THJ4 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
VPS13DQ5THJ4 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
VPS13DQ5THJ4 COX5BP8-201ENST00000416911 349 ntBASIC11.45□□□□□ -0.58
VPS13DQ5THJ4 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC11.45□□□□□ -0.58
VPS13DQ5THJ4 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
VPS13DQ5THJ4 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC11.45□□□□□ -0.58
VPS13DQ5THJ4 SPDYE18-201ENST00000510091 1050 ntBASIC11.45□□□□□ -0.58
VPS13DQ5THJ4 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
VPS13DQ5THJ4 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
VPS13DQ5THJ4 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
VPS13DQ5THJ4 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
VPS13DQ5THJ4 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
VPS13DQ5THJ4 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC11.45□□□□□ -0.58
VPS13DQ5THJ4 PXK-206ENST00000463280 2825 ntTSL 2 BASIC11.45□□□□□ -0.58
VPS13DQ5THJ4 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 RN7SL692P-201ENST00000464677 288 ntBASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 AL138781.2-201ENST00000617896 1843 ntBASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 TP53TG3HP-202ENST00000569755 579 ntBASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 SPTSSB-204ENST00000617024 1292 ntBASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
VPS13DQ5THJ4 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
VPS13DQ5THJ4 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC11.43□□□□□ -0.58
VPS13DQ5THJ4 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
VPS13DQ5THJ4 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC11.43□□□□□ -0.58
VPS13DQ5THJ4 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC11.43□□□□□ -0.58
VPS13DQ5THJ4 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC11.43□□□□□ -0.58
VPS13DQ5THJ4 COQ6-210ENST00000554920 649 ntTSL 3 BASIC11.43□□□□□ -0.58
VPS13DQ5THJ4 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC11.43□□□□□ -0.58
VPS13DQ5THJ4 FLJ13224-201ENST00000313737 1514 ntBASIC11.43□□□□□ -0.58
VPS13DQ5THJ4 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC11.43□□□□□ -0.58
VPS13DQ5THJ4 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC11.43□□□□□ -0.58
VPS13DQ5THJ4 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
VPS13DQ5THJ4 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC11.43□□□□□ -0.58
VPS13DQ5THJ4 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
VPS13DQ5THJ4 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
VPS13DQ5THJ4 ATP5G2P4-201ENST00000442175 420 ntBASIC11.43□□□□□ -0.58
VPS13DQ5THJ4 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC11.43□□□□□ -0.58
VPS13DQ5THJ4 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
VPS13DQ5THJ4 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms