Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFX4Q33E94 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
RFX4Q33E94 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFX4Q33E94 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFX4Q33E94 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RFX4Q33E94 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFX4Q33E94 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFX4Q33E94 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
RFX4Q33E94 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX4Q33E94 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.1■□□□□ 0.17
RFX4Q33E94 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX4Q33E94 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RFX4Q33E94 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX4Q33E94 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RFX4Q33E94 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
RFX4Q33E94 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RFX4Q33E94 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RFX4Q33E94 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RFX4Q33E94 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
RFX4Q33E94 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RFX4Q33E94 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX4Q33E94 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RFX4Q33E94 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
RFX4Q33E94 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC16.1■□□□□ 0.17
RFX4Q33E94 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC16.1■□□□□ 0.17
RFX4Q33E94 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC16.1■□□□□ 0.17
RFX4Q33E94 GCSHP2-201ENST00000560971 527 ntBASIC16.1■□□□□ 0.17
RFX4Q33E94 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX4Q33E94 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
RFX4Q33E94 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX4Q33E94 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RFX4Q33E94 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX4Q33E94 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RFX4Q33E94 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RFX4Q33E94 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.1■□□□□ 0.17
RFX4Q33E94 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX4Q33E94 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX4Q33E94 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX4Q33E94 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC16.1■□□□□ 0.17
RFX4Q33E94 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.1■□□□□ 0.17
RFX4Q33E94 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.09■□□□□ 0.17
RFX4Q33E94 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RFX4Q33E94 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
RFX4Q33E94 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.09■□□□□ 0.17
RFX4Q33E94 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.09■□□□□ 0.17
RFX4Q33E94 RNF216P1-203ENST00000404404 2427 ntBASIC16.09■□□□□ 0.17
RFX4Q33E94 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RFX4Q33E94 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.09■□□□□ 0.17
RFX4Q33E94 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RFX4Q33E94 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
RFX4Q33E94 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RFX4Q33E94 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.09■□□□□ 0.17
RFX4Q33E94 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
RFX4Q33E94 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
RFX4Q33E94 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC16.09■□□□□ 0.17
RFX4Q33E94 SLC25A1P3-201ENST00000395415 828 ntBASIC16.09■□□□□ 0.17
RFX4Q33E94 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
RFX4Q33E94 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC16.09■□□□□ 0.17
RFX4Q33E94 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC16.09■□□□□ 0.17
RFX4Q33E94 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
RFX4Q33E94 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC16.09■□□□□ 0.17
RFX4Q33E94 RPS20-210ENST00000523936 899 ntTSL 2 BASIC16.09■□□□□ 0.17
RFX4Q33E94 CD81-212ENST00000526072 1172 ntTSL 5 BASIC16.09■□□□□ 0.17
RFX4Q33E94 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC16.09■□□□□ 0.17
RFX4Q33E94 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC16.09■□□□□ 0.17
RFX4Q33E94 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RFX4Q33E94 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
RFX4Q33E94 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
RFX4Q33E94 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RFX4Q33E94 KRT18P22-201ENST00000402024 1347 ntBASIC16.09■□□□□ 0.17
RFX4Q33E94 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RFX4Q33E94 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RFX4Q33E94 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RFX4Q33E94 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RFX4Q33E94 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
RFX4Q33E94 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
RFX4Q33E94 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
RFX4Q33E94 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RFX4Q33E94 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC16.09■□□□□ 0.17
RFX4Q33E94 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RFX4Q33E94 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.09■□□□□ 0.17
RFX4Q33E94 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.09■□□□□ 0.17
RFX4Q33E94 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
RFX4Q33E94 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
RFX4Q33E94 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.08■□□□□ 0.17
RFX4Q33E94 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC16.08■□□□□ 0.17
RFX4Q33E94 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
RFX4Q33E94 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RFX4Q33E94 AC092053.1-201ENST00000605787 1936 ntBASIC16.08■□□□□ 0.16
RFX4Q33E94 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
RFX4Q33E94 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RFX4Q33E94 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
RFX4Q33E94 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
RFX4Q33E94 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC16.08■□□□□ 0.16
RFX4Q33E94 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC16.08■□□□□ 0.16
RFX4Q33E94 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
RFX4Q33E94 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
RFX4Q33E94 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC16.08■□□□□ 0.16
RFX4Q33E94 TMA16-209ENST00000513272 803 ntTSL 2 BASIC16.08■□□□□ 0.16
RFX4Q33E94 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms