Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PKNOX1P55347 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.98■□□□□ 0.31
PKNOX1P55347 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PKNOX1P55347 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PKNOX1P55347 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PKNOX1P55347 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PKNOX1P55347 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PKNOX1P55347 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC16.98■□□□□ 0.31
PKNOX1P55347 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
PKNOX1P55347 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
PKNOX1P55347 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC16.98■□□□□ 0.31
PKNOX1P55347 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC16.98■□□□□ 0.31
PKNOX1P55347 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC16.98■□□□□ 0.31
PKNOX1P55347 AC007967.3-201ENST00000434308 558 ntBASIC16.98■□□□□ 0.31
PKNOX1P55347 RBM42-202ENST00000586618 771 ntTSL 3 BASIC16.98■□□□□ 0.31
PKNOX1P55347 AC019129.2-201ENST00000609837 1235 ntBASIC16.98■□□□□ 0.31
PKNOX1P55347 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.98■□□□□ 0.31
PKNOX1P55347 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC16.98■□□□□ 0.31
PKNOX1P55347 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
PKNOX1P55347 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.98■□□□□ 0.31
PKNOX1P55347 FER1L4-210ENST00000615531 5998 ntBASIC16.98■□□□□ 0.31
PKNOX1P55347 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.98■□□□□ 0.31
PKNOX1P55347 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PKNOX1P55347 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PKNOX1P55347 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
PKNOX1P55347 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
PKNOX1P55347 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
PKNOX1P55347 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PKNOX1P55347 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PKNOX1P55347 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.97■□□□□ 0.31
PKNOX1P55347 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
PKNOX1P55347 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PKNOX1P55347 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PKNOX1P55347 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PKNOX1P55347 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PKNOX1P55347 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PKNOX1P55347 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
PKNOX1P55347 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
PKNOX1P55347 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PKNOX1P55347 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PKNOX1P55347 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.97■□□□□ 0.31
PKNOX1P55347 AL645929.1-201ENST00000420084 975 ntBASIC16.97■□□□□ 0.31
PKNOX1P55347 AC104076.2-201ENST00000448912 469 ntBASIC16.97■□□□□ 0.31
PKNOX1P55347 AL671277.2-201ENST00000458060 996 ntBASIC16.97■□□□□ 0.31
PKNOX1P55347 RN7SL606P-201ENST00000472779 293 ntBASIC16.97■□□□□ 0.31
PKNOX1P55347 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC16.97■□□□□ 0.31
PKNOX1P55347 AC122714.2-201ENST00000502787 707 ntBASIC16.97■□□□□ 0.31
PKNOX1P55347 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC16.97■□□□□ 0.31
PKNOX1P55347 PPOX-219ENST00000544598 813 ntTSL 2 BASIC16.97■□□□□ 0.31
PKNOX1P55347 LINC01238-205ENST00000567549 1107 ntBASIC16.97■□□□□ 0.31
PKNOX1P55347 AL353801.3-201ENST00000609898 542 ntBASIC16.97■□□□□ 0.31
PKNOX1P55347 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PKNOX1P55347 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PKNOX1P55347 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PKNOX1P55347 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
PKNOX1P55347 AC005915.1-201ENST00000624912 2018 ntBASIC16.97■□□□□ 0.31
PKNOX1P55347 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PKNOX1P55347 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PKNOX1P55347 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PKNOX1P55347 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.97■□□□□ 0.31
PKNOX1P55347 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
PKNOX1P55347 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
PKNOX1P55347 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
PKNOX1P55347 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PKNOX1P55347 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PKNOX1P55347 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
PKNOX1P55347 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PKNOX1P55347 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.96■□□□□ 0.31
PKNOX1P55347 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PKNOX1P55347 AC125634.1-201ENST00000438758 1403 ntBASIC16.96■□□□□ 0.31
PKNOX1P55347 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.96■□□□□ 0.31
PKNOX1P55347 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.96■□□□□ 0.31
PKNOX1P55347 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PKNOX1P55347 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.96■□□□□ 0.31
PKNOX1P55347 LINC02012-201ENST00000608206 1725 ntBASIC16.96■□□□□ 0.31
PKNOX1P55347 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PKNOX1P55347 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.96■□□□□ 0.31
PKNOX1P55347 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
PKNOX1P55347 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PKNOX1P55347 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PKNOX1P55347 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PKNOX1P55347 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PKNOX1P55347 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC16.96■□□□□ 0.31
PKNOX1P55347 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC16.96■□□□□ 0.31
PKNOX1P55347 AC022616.7-201ENST00000525383 220 ntBASIC16.96■□□□□ 0.31
PKNOX1P55347 AC109462.3-201ENST00000573934 613 ntBASIC16.96■□□□□ 0.31
PKNOX1P55347 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.31
PKNOX1P55347 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
PKNOX1P55347 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.96■□□□□ 0.31
PKNOX1P55347 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PKNOX1P55347 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PKNOX1P55347 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PKNOX1P55347 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.96■□□□□ 0.31
PKNOX1P55347 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
PKNOX1P55347 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.3
PKNOX1P55347 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
PKNOX1P55347 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
PKNOX1P55347 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.3
PKNOX1P55347 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.96■□□□□ 0.3
PKNOX1P55347 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms