Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CR1P49238 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC15.21■□□□□ 0.03
CX3CR1P49238 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CR1P49238 KRT18P1-202ENST00000452408 1331 ntBASIC15.21■□□□□ 0.03
CX3CR1P49238 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CR1P49238 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CR1P49238 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CR1P49238 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC15.21■□□□□ 0.03
CX3CR1P49238 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CR1P49238 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CR1P49238 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CR1P49238 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC15.21■□□□□ 0.03
CX3CR1P49238 AC060834.1-201ENST00000443027 2032 ntBASIC15.21■□□□□ 0.03
CX3CR1P49238 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC15.21■□□□□ 0.03
CX3CR1P49238 AL049757.1-201ENST00000616842 1596 ntBASIC15.21■□□□□ 0.03
CX3CR1P49238 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CR1P49238 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC15.21■□□□□ 0.03
CX3CR1P49238 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC15.21■□□□□ 0.03
CX3CR1P49238 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CR1P49238 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CR1P49238 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CR1P49238 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC15.21■□□□□ 0.03
CX3CR1P49238 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CR1P49238 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC15.21■□□□□ 0.03
CX3CR1P49238 FAM210CP-201ENST00000445714 574 ntBASIC15.21■□□□□ 0.03
CX3CR1P49238 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC15.21■□□□□ 0.03
CX3CR1P49238 AC091607.1-201ENST00000490318 1060 ntBASIC15.21■□□□□ 0.03
CX3CR1P49238 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC15.21■□□□□ 0.03
CX3CR1P49238 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
CX3CR1P49238 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CR1P49238 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CR1P49238 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CR1P49238 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CR1P49238 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CR1P49238 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
CX3CR1P49238 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CR1P49238 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CR1P49238 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC15.21■□□□□ 0.02
CX3CR1P49238 AC016734.2-201ENST00000624325 1377 ntBASIC15.21■□□□□ 0.02
CX3CR1P49238 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC15.21■□□□□ 0.02
CX3CR1P49238 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
CX3CR1P49238 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
CX3CR1P49238 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CX3CR1P49238 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
CX3CR1P49238 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CX3CR1P49238 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
CX3CR1P49238 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CX3CR1P49238 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC15.2■□□□□ 0.02
CX3CR1P49238 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CX3CR1P49238 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC15.2■□□□□ 0.02
CX3CR1P49238 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CX3CR1P49238 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CX3CR1P49238 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CX3CR1P49238 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
CX3CR1P49238 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CX3CR1P49238 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CX3CR1P49238 KRT8P10-201ENST00000450021 1447 ntBASIC15.2■□□□□ 0.02
CX3CR1P49238 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CX3CR1P49238 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
CX3CR1P49238 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
CX3CR1P49238 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CX3CR1P49238 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CX3CR1P49238 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CX3CR1P49238 DANCR-204ENST00000444958 709 ntTSL 3 BASIC15.2■□□□□ 0.02
CX3CR1P49238 TSSC2-201ENST00000450217 709 ntBASIC15.2■□□□□ 0.02
CX3CR1P49238 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC15.2■□□□□ 0.02
CX3CR1P49238 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC15.2■□□□□ 0.02
CX3CR1P49238 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
CX3CR1P49238 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CX3CR1P49238 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
CX3CR1P49238 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC15.2■□□□□ 0.02
CX3CR1P49238 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CX3CR1P49238 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CX3CR1P49238 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CX3CR1P49238 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
CX3CR1P49238 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC15.2■□□□□ 0.02
CX3CR1P49238 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC15.2■□□□□ 0.02
CX3CR1P49238 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CX3CR1P49238 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CX3CR1P49238 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CX3CR1P49238 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC15.19■□□□□ 0.02
CX3CR1P49238 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CX3CR1P49238 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CX3CR1P49238 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CX3CR1P49238 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CX3CR1P49238 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
CX3CR1P49238 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
CX3CR1P49238 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CX3CR1P49238 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
CX3CR1P49238 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CX3CR1P49238 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CX3CR1P49238 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
CX3CR1P49238 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CX3CR1P49238 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC15.19■□□□□ 0.02
CX3CR1P49238 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CX3CR1P49238 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CX3CR1P49238 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC15.19■□□□□ 0.02
CX3CR1P49238 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CX3CR1P49238 PCED1CP-201ENST00000419887 785 ntBASIC15.19■□□□□ 0.02
CX3CR1P49238 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms