Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC22.48■■□□□ 1.19
COL18A1P39060 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL18A1P39060 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL18A1P39060 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL18A1P39060 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
COL18A1P39060 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL18A1P39060 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL18A1P39060 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL18A1P39060 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
COL18A1P39060 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC22.47■■□□□ 1.19
COL18A1P39060 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
COL18A1P39060 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
COL18A1P39060 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC22.47■■□□□ 1.19
COL18A1P39060 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC22.47■■□□□ 1.19
COL18A1P39060 NOP2-220ENST00000545915 630 ntTSL 2 BASIC22.47■■□□□ 1.19
COL18A1P39060 RARRES2P9-201ENST00000565168 469 ntBASIC22.47■■□□□ 1.19
COL18A1P39060 MIR4492-201ENST00000581627 80 ntBASIC22.47■■□□□ 1.19
COL18A1P39060 WT1-AS_2.1-201ENST00000613208 137 ntBASIC22.47■■□□□ 1.19
COL18A1P39060 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC22.47■■□□□ 1.19
COL18A1P39060 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC22.47■■□□□ 1.19
COL18A1P39060 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC22.47■■□□□ 1.19
COL18A1P39060 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL18A1P39060 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL18A1P39060 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC22.46■■□□□ 1.19
COL18A1P39060 NME9-203ENST00000383180 2133 ntTSL 2 BASIC22.46■■□□□ 1.19
COL18A1P39060 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
COL18A1P39060 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
COL18A1P39060 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC22.46■■□□□ 1.19
COL18A1P39060 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
COL18A1P39060 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC22.46■■□□□ 1.19
COL18A1P39060 AC010336.2-201ENST00000564226 506 ntBASIC22.46■■□□□ 1.19
COL18A1P39060 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC22.46■■□□□ 1.19
COL18A1P39060 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
COL18A1P39060 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
COL18A1P39060 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC22.46■■□□□ 1.19
COL18A1P39060 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC22.46■■□□□ 1.19
COL18A1P39060 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
COL18A1P39060 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
COL18A1P39060 BICD1-207ENST00000551848 1962 ntBASIC22.46■■□□□ 1.19
COL18A1P39060 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC22.46■■□□□ 1.19
COL18A1P39060 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC22.46■■□□□ 1.19
COL18A1P39060 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
COL18A1P39060 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
COL18A1P39060 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
COL18A1P39060 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC22.46■■□□□ 1.19
COL18A1P39060 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC22.46■■□□□ 1.19
COL18A1P39060 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC22.45■■□□□ 1.19
COL18A1P39060 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC22.45■■□□□ 1.19
COL18A1P39060 PIN1P1-201ENST00000412108 996 ntBASIC22.45■■□□□ 1.19
COL18A1P39060 AC027369.6-201ENST00000525520 931 ntBASIC22.45■■□□□ 1.19
COL18A1P39060 CR383656.12-201ENST00000549567 513 ntBASIC22.45■■□□□ 1.19
COL18A1P39060 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC22.45■■□□□ 1.19
COL18A1P39060 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC22.45■■□□□ 1.18
COL18A1P39060 AL355312.1-201ENST00000407115 2176 ntBASIC22.45■■□□□ 1.18
COL18A1P39060 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
COL18A1P39060 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL18A1P39060 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
COL18A1P39060 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL18A1P39060 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL18A1P39060 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
COL18A1P39060 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
COL18A1P39060 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
COL18A1P39060 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC22.45■■□□□ 1.18
COL18A1P39060 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC22.45■■□□□ 1.18
COL18A1P39060 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC22.45■■□□□ 1.18
COL18A1P39060 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
COL18A1P39060 TOP3BP1-201ENST00000420768 1380 ntBASIC22.45■■□□□ 1.18
COL18A1P39060 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC22.45■■□□□ 1.18
COL18A1P39060 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
COL18A1P39060 AC133963.1-201ENST00000504166 1679 ntBASIC22.45■■□□□ 1.18
COL18A1P39060 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC22.44■■□□□ 1.18
COL18A1P39060 LINC00896-202ENST00000609602 2128 ntBASIC22.44■■□□□ 1.18
COL18A1P39060 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC22.44■■□□□ 1.18
COL18A1P39060 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC22.44■■□□□ 1.18
COL18A1P39060 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC22.44■■□□□ 1.18
COL18A1P39060 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
COL18A1P39060 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC22.44■■□□□ 1.18
COL18A1P39060 CYP2A7P1-201ENST00000595391 815 ntBASIC22.44■■□□□ 1.18
COL18A1P39060 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
COL18A1P39060 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
COL18A1P39060 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC22.44■■□□□ 1.18
COL18A1P39060 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC22.44■■□□□ 1.18
COL18A1P39060 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
COL18A1P39060 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
COL18A1P39060 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
COL18A1P39060 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
COL18A1P39060 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
COL18A1P39060 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
COL18A1P39060 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
COL18A1P39060 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
COL18A1P39060 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC22.44■■□□□ 1.18
COL18A1P39060 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
COL18A1P39060 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC22.44■■□□□ 1.18
COL18A1P39060 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC22.43■■□□□ 1.18
COL18A1P39060 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC22.43■■□□□ 1.18
COL18A1P39060 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC22.43■■□□□ 1.18
COL18A1P39060 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC22.43■■□□□ 1.18
COL18A1P39060 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
COL18A1P39060 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
COL18A1P39060 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC22.43■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms