Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VIMP08670 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.41■□□□□ 0.38
VIMP08670 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.41■□□□□ 0.38
VIMP08670 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VIMP08670 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VIMP08670 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VIMP08670 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VIMP08670 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VIMP08670 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.41■□□□□ 0.38
VIMP08670 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VIMP08670 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.41■□□□□ 0.38
VIMP08670 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VIMP08670 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC17.41■□□□□ 0.38
VIMP08670 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VIMP08670 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VIMP08670 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VIMP08670 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
VIMP08670 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VIMP08670 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VIMP08670 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VIMP08670 NID2-208ENST00000617139 3827 ntTSL 5 BASIC17.41■□□□□ 0.38
VIMP08670 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VIMP08670 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VIMP08670 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VIMP08670 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VIMP08670 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VIMP08670 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
VIMP08670 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC17.4■□□□□ 0.38
VIMP08670 KRT8P47-201ENST00000604727 1398 ntBASIC17.4■□□□□ 0.38
VIMP08670 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.4■□□□□ 0.38
VIMP08670 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VIMP08670 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
VIMP08670 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VIMP08670 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
VIMP08670 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VIMP08670 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VIMP08670 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC17.4■□□□□ 0.38
VIMP08670 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VIMP08670 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.4■□□□□ 0.38
VIMP08670 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
VIMP08670 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.4■□□□□ 0.38
VIMP08670 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VIMP08670 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
VIMP08670 ISG20-202ENST00000379224 540 ntTSL 3 BASIC17.4■□□□□ 0.38
VIMP08670 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC17.4■□□□□ 0.38
VIMP08670 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VIMP08670 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VIMP08670 AL355355.2-201ENST00000442321 338 ntBASIC17.4■□□□□ 0.38
VIMP08670 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC17.4■□□□□ 0.38
VIMP08670 RNF121-214ENST00000533380 870 ntTSL 3 BASIC17.4■□□□□ 0.38
VIMP08670 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.4■□□□□ 0.38
VIMP08670 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.4■□□□□ 0.38
VIMP08670 AC010240.3-201ENST00000607688 395 ntBASIC17.4■□□□□ 0.38
VIMP08670 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC17.4■□□□□ 0.38
VIMP08670 CR769767.2-201ENST00000622735 460 ntBASIC17.4■□□□□ 0.38
VIMP08670 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
VIMP08670 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
VIMP08670 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VIMP08670 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC17.4■□□□□ 0.38
VIMP08670 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
VIMP08670 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC17.4■□□□□ 0.38
VIMP08670 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VIMP08670 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
VIMP08670 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.4■□□□□ 0.38
VIMP08670 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VIMP08670 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VIMP08670 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.4■□□□□ 0.38
VIMP08670 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.4■□□□□ 0.38
VIMP08670 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VIMP08670 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VIMP08670 AC024909.3-201ENST00000611513 2257 ntBASIC17.4■□□□□ 0.38
VIMP08670 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VIMP08670 MBP-202ENST00000355994 2772 ntTSL 5 BASIC17.4■□□□□ 0.38
VIMP08670 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
VIMP08670 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
VIMP08670 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
VIMP08670 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC17.39■□□□□ 0.37
VIMP08670 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
VIMP08670 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
VIMP08670 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC17.39■□□□□ 0.37
VIMP08670 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
VIMP08670 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
VIMP08670 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VIMP08670 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
VIMP08670 ID1-201ENST00000376105 1233 ntBASIC17.39■□□□□ 0.37
VIMP08670 HLA-L-209ENST00000420110 1011 ntBASIC17.39■□□□□ 0.37
VIMP08670 APTR-205ENST00000447009 902 ntTSL 2 BASIC17.39■□□□□ 0.37
VIMP08670 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC17.39■□□□□ 0.37
VIMP08670 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.39■□□□□ 0.37
VIMP08670 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.39■□□□□ 0.37
VIMP08670 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.39■□□□□ 0.37
VIMP08670 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
VIMP08670 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
VIMP08670 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
VIMP08670 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
VIMP08670 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC17.39■□□□□ 0.37
VIMP08670 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VIMP08670 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC17.39■□□□□ 0.37
VIMP08670 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
VIMP08670 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms