Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
BRF1Q92994 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
BRF1Q92994 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC20.35■□□□□ 0.85
BRF1Q92994 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
BRF1Q92994 AL121761.2-201ENST00000598007 1648 ntBASIC20.35■□□□□ 0.85
BRF1Q92994 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
BRF1Q92994 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BRF1Q92994 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BRF1Q92994 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC20.35■□□□□ 0.85
BRF1Q92994 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC20.35■□□□□ 0.85
BRF1Q92994 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC20.35■□□□□ 0.85
BRF1Q92994 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
BRF1Q92994 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
BRF1Q92994 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
BRF1Q92994 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC20.35■□□□□ 0.85
BRF1Q92994 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC20.35■□□□□ 0.85
BRF1Q92994 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
BRF1Q92994 AC106795.1-205ENST00000512851 1056 ntBASIC20.35■□□□□ 0.85
BRF1Q92994 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC20.35■□□□□ 0.85
BRF1Q92994 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC20.35■□□□□ 0.85
BRF1Q92994 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC20.35■□□□□ 0.85
BRF1Q92994 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
BRF1Q92994 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC20.35■□□□□ 0.85
BRF1Q92994 CLEC4GP1-201ENST00000596555 870 ntBASIC20.35■□□□□ 0.85
BRF1Q92994 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BRF1Q92994 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
BRF1Q92994 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
BRF1Q92994 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BRF1Q92994 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BRF1Q92994 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BRF1Q92994 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC20.35■□□□□ 0.85
BRF1Q92994 AC011676.5-201ENST00000624864 2660 ntBASIC20.35■□□□□ 0.85
BRF1Q92994 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BRF1Q92994 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
BRF1Q92994 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
BRF1Q92994 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC20.35■□□□□ 0.85
BRF1Q92994 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
BRF1Q92994 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC20.35■□□□□ 0.85
BRF1Q92994 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC20.34■□□□□ 0.85
BRF1Q92994 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
BRF1Q92994 EGFEM1P-202ENST00000431685 1563 ntBASIC20.34■□□□□ 0.85
BRF1Q92994 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
BRF1Q92994 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
BRF1Q92994 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
BRF1Q92994 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BRF1Q92994 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BRF1Q92994 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
BRF1Q92994 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
BRF1Q92994 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
BRF1Q92994 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC20.34■□□□□ 0.85
BRF1Q92994 CYB561-217ENST00000582997 877 ntTSL 5 BASIC20.34■□□□□ 0.85
BRF1Q92994 COPE-211ENST00000600932 1144 ntTSL 5 BASIC20.34■□□□□ 0.85
BRF1Q92994 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC20.34■□□□□ 0.85
BRF1Q92994 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC20.34■□□□□ 0.85
BRF1Q92994 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC20.34■□□□□ 0.85
BRF1Q92994 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC20.34■□□□□ 0.85
BRF1Q92994 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
BRF1Q92994 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
BRF1Q92994 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
BRF1Q92994 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
BRF1Q92994 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
BRF1Q92994 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BRF1Q92994 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
BRF1Q92994 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
BRF1Q92994 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC20.34■□□□□ 0.85
BRF1Q92994 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BRF1Q92994 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BRF1Q92994 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
BRF1Q92994 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
BRF1Q92994 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
BRF1Q92994 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
BRF1Q92994 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC20.33■□□□□ 0.85
BRF1Q92994 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
BRF1Q92994 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
BRF1Q92994 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
BRF1Q92994 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC20.33■□□□□ 0.85
BRF1Q92994 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC20.33■□□□□ 0.85
BRF1Q92994 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC20.33■□□□□ 0.85
BRF1Q92994 BX005266.1-201ENST00000473402 457 ntBASIC20.33■□□□□ 0.85
BRF1Q92994 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
BRF1Q92994 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC20.33■□□□□ 0.85
BRF1Q92994 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.85
BRF1Q92994 AC091304.2-201ENST00000564639 760 ntBASIC20.33■□□□□ 0.85
BRF1Q92994 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC20.33■□□□□ 0.85
BRF1Q92994 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
BRF1Q92994 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
BRF1Q92994 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
BRF1Q92994 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
BRF1Q92994 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
BRF1Q92994 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
BRF1Q92994 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.84
BRF1Q92994 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
BRF1Q92994 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC20.33■□□□□ 0.84
BRF1Q92994 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
BRF1Q92994 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
BRF1Q92994 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
BRF1Q92994 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
BRF1Q92994 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
BRF1Q92994 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC20.32■□□□□ 0.84
BRF1Q92994 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms