Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
ATG4AQ8WYN0 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
ATG4AQ8WYN0 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
ATG4AQ8WYN0 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
ATG4AQ8WYN0 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
ATG4AQ8WYN0 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
ATG4AQ8WYN0 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
ATG4AQ8WYN0 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
ATG4AQ8WYN0 CD320-202ENST00000537716 1119 ntTSL 2 BASIC17.94■□□□□ 0.46
ATG4AQ8WYN0 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC17.94■□□□□ 0.46
ATG4AQ8WYN0 AC011840.4-201ENST00000578471 627 ntBASIC17.94■□□□□ 0.46
ATG4AQ8WYN0 STK25P1-201ENST00000585406 838 ntBASIC17.94■□□□□ 0.46
ATG4AQ8WYN0 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.94■□□□□ 0.46
ATG4AQ8WYN0 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
ATG4AQ8WYN0 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
ATG4AQ8WYN0 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.94■□□□□ 0.46
ATG4AQ8WYN0 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
ATG4AQ8WYN0 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
ATG4AQ8WYN0 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
ATG4AQ8WYN0 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
ATG4AQ8WYN0 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.94■□□□□ 0.46
ATG4AQ8WYN0 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
ATG4AQ8WYN0 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
ATG4AQ8WYN0 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.94■□□□□ 0.46
ATG4AQ8WYN0 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
ATG4AQ8WYN0 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 FAM220CP-201ENST00000395253 831 ntBASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 LTBR-211ENST00000543190 785 ntTSL 3 BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 AC090616.6-201ENST00000582640 721 ntBASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.93■□□□□ 0.46
ATG4AQ8WYN0 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 EGFEM1P-202ENST00000431685 1563 ntBASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms