Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
BEST3Q8N1M1 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
BEST3Q8N1M1 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
BEST3Q8N1M1 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
BEST3Q8N1M1 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
BEST3Q8N1M1 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC16.08■□□□□ 0.16
BEST3Q8N1M1 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.08■□□□□ 0.16
BEST3Q8N1M1 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
BEST3Q8N1M1 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.08■□□□□ 0.16
BEST3Q8N1M1 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
BEST3Q8N1M1 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC16.08■□□□□ 0.16
BEST3Q8N1M1 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
BEST3Q8N1M1 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
BEST3Q8N1M1 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.08■□□□□ 0.16
BEST3Q8N1M1 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
BEST3Q8N1M1 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
BEST3Q8N1M1 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
BEST3Q8N1M1 AC009336.1-201ENST00000608941 1553 ntBASIC16.08■□□□□ 0.16
BEST3Q8N1M1 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC16.08■□□□□ 0.16
BEST3Q8N1M1 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
BEST3Q8N1M1 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
BEST3Q8N1M1 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
BEST3Q8N1M1 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.08■□□□□ 0.16
BEST3Q8N1M1 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC16.08■□□□□ 0.16
BEST3Q8N1M1 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 AC007967.2-201ENST00000432613 625 ntBASIC16.07■□□□□ 0.16
BEST3Q8N1M1 AL591424.1-201ENST00000442569 1213 ntBASIC16.07■□□□□ 0.16
BEST3Q8N1M1 KRT18P3-201ENST00000451602 1288 ntBASIC16.07■□□□□ 0.16
BEST3Q8N1M1 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 HS6ST1P1-201ENST00000481504 1234 ntBASIC16.07■□□□□ 0.16
BEST3Q8N1M1 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 AC006504.4-201ENST00000592118 1568 ntBASIC16.07■□□□□ 0.16
BEST3Q8N1M1 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 CD276-201ENST00000318424 2738 ntTSL 5 BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
BEST3Q8N1M1 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
BEST3Q8N1M1 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
BEST3Q8N1M1 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
BEST3Q8N1M1 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
BEST3Q8N1M1 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
BEST3Q8N1M1 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
BEST3Q8N1M1 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
BEST3Q8N1M1 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
BEST3Q8N1M1 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.06■□□□□ 0.16
BEST3Q8N1M1 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.06■□□□□ 0.16
BEST3Q8N1M1 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
BEST3Q8N1M1 HLA-DQB1-201ENST00000374943 1656 ntBASIC16.06■□□□□ 0.16
BEST3Q8N1M1 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
BEST3Q8N1M1 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
BEST3Q8N1M1 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
BEST3Q8N1M1 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
BEST3Q8N1M1 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
BEST3Q8N1M1 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.06■□□□□ 0.16
BEST3Q8N1M1 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
BEST3Q8N1M1 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
BEST3Q8N1M1 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
BEST3Q8N1M1 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.06■□□□□ 0.16
BEST3Q8N1M1 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
BEST3Q8N1M1 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
BEST3Q8N1M1 MYCLP1-201ENST00000372451 1075 ntBASIC16.06■□□□□ 0.16
BEST3Q8N1M1 BX842568.4-201ENST00000421222 227 ntBASIC16.06■□□□□ 0.16
BEST3Q8N1M1 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
BEST3Q8N1M1 AC108751.1-201ENST00000490852 363 ntBASIC16.06■□□□□ 0.16
BEST3Q8N1M1 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.06■□□□□ 0.16
BEST3Q8N1M1 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
BEST3Q8N1M1 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
BEST3Q8N1M1 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
BEST3Q8N1M1 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
BEST3Q8N1M1 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
BEST3Q8N1M1 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
BEST3Q8N1M1 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
BEST3Q8N1M1 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
BEST3Q8N1M1 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms