Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SRP54P61011 AC046185.3-201ENST00000623228 1824 ntBASIC17.07■□□□□ 0.32
SRP54P61011 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SRP54P61011 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SRP54P61011 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SRP54P61011 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
SRP54P61011 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SRP54P61011 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.07■□□□□ 0.32
SRP54P61011 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.07■□□□□ 0.32
SRP54P61011 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SRP54P61011 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.07■□□□□ 0.32
SRP54P61011 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.07■□□□□ 0.32
SRP54P61011 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SRP54P61011 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.07■□□□□ 0.32
SRP54P61011 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SRP54P61011 PTCHD3P3-201ENST00000403073 906 ntBASIC17.07■□□□□ 0.32
SRP54P61011 MIR1233-2-201ENST00000408138 82 ntBASIC17.07■□□□□ 0.32
SRP54P61011 MIR1233-1-201ENST00000408722 82 ntBASIC17.07■□□□□ 0.32
SRP54P61011 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
SRP54P61011 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC17.07■□□□□ 0.32
SRP54P61011 CRYGEP-201ENST00000412192 528 ntBASIC17.07■□□□□ 0.32
SRP54P61011 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC17.07■□□□□ 0.32
SRP54P61011 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.07■□□□□ 0.32
SRP54P61011 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC17.07■□□□□ 0.32
SRP54P61011 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC17.07■□□□□ 0.32
SRP54P61011 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC17.07■□□□□ 0.32
SRP54P61011 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC17.07■□□□□ 0.32
SRP54P61011 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SRP54P61011 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.07■□□□□ 0.32
SRP54P61011 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
SRP54P61011 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SRP54P61011 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.07■□□□□ 0.32
SRP54P61011 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SRP54P61011 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SRP54P61011 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SRP54P61011 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
SRP54P61011 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.07■□□□□ 0.32
SRP54P61011 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.07■□□□□ 0.32
SRP54P61011 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.07■□□□□ 0.32
SRP54P61011 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SRP54P61011 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.06■□□□□ 0.32
SRP54P61011 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
SRP54P61011 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.06■□□□□ 0.32
SRP54P61011 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SRP54P61011 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SRP54P61011 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SRP54P61011 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SRP54P61011 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.06■□□□□ 0.32
SRP54P61011 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.06■□□□□ 0.32
SRP54P61011 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SRP54P61011 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SRP54P61011 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
SRP54P61011 ACTG1P4-201ENST00000425123 1122 ntBASIC17.06■□□□□ 0.32
SRP54P61011 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC17.06■□□□□ 0.32
SRP54P61011 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC17.06■□□□□ 0.32
SRP54P61011 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.06■□□□□ 0.32
SRP54P61011 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC17.06■□□□□ 0.32
SRP54P61011 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC17.06■□□□□ 0.32
SRP54P61011 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.06■□□□□ 0.32
SRP54P61011 AL139327.4-201ENST00000612362 153 ntBASIC17.06■□□□□ 0.32
SRP54P61011 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
SRP54P61011 AC004790.2-201ENST00000623588 572 ntBASIC17.06■□□□□ 0.32
SRP54P61011 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
SRP54P61011 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.06■□□□□ 0.32
SRP54P61011 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.06■□□□□ 0.32
SRP54P61011 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SRP54P61011 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SRP54P61011 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
SRP54P61011 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
SRP54P61011 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SRP54P61011 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SRP54P61011 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
SRP54P61011 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SRP54P61011 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
SRP54P61011 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
SRP54P61011 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.05■□□□□ 0.32
SRP54P61011 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SRP54P61011 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
SRP54P61011 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SRP54P61011 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.05■□□□□ 0.32
SRP54P61011 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
SRP54P61011 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.05■□□□□ 0.32
SRP54P61011 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SRP54P61011 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SRP54P61011 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
SRP54P61011 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
SRP54P61011 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.05■□□□□ 0.32
SRP54P61011 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
SRP54P61011 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SRP54P61011 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SRP54P61011 AP002414.1-201ENST00000391405 1147 ntBASIC17.05■□□□□ 0.32
SRP54P61011 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.05■□□□□ 0.32
SRP54P61011 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC17.05■□□□□ 0.32
SRP54P61011 PRSS29P-201ENST00000440800 595 ntBASIC17.05■□□□□ 0.32
SRP54P61011 VN2R19P-201ENST00000442399 1052 ntBASIC17.05■□□□□ 0.32
SRP54P61011 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.05■□□□□ 0.32
SRP54P61011 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC17.05■□□□□ 0.32
SRP54P61011 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.05■□□□□ 0.32
SRP54P61011 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SRP54P61011 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms