Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 NOP2-211ENST00000540228 668 ntTSL 2 BASIC23.68■■□□□ 1.38
MSH6P52701 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC23.68■■□□□ 1.38
MSH6P52701 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC23.68■■□□□ 1.38
MSH6P52701 AC007967.4-201ENST00000614700 386 ntBASIC23.68■■□□□ 1.38
MSH6P52701 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
MSH6P52701 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
MSH6P52701 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC23.68■■□□□ 1.38
MSH6P52701 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC23.68■■□□□ 1.38
MSH6P52701 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC23.68■■□□□ 1.38
MSH6P52701 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC23.68■■□□□ 1.38
MSH6P52701 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC23.68■■□□□ 1.38
MSH6P52701 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC23.68■■□□□ 1.38
MSH6P52701 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC23.68■■□□□ 1.38
MSH6P52701 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
MSH6P52701 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
MSH6P52701 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
MSH6P52701 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
MSH6P52701 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
MSH6P52701 AL353779.1-201ENST00000434793 351 ntBASIC23.67■■□□□ 1.38
MSH6P52701 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC23.67■■□□□ 1.38
MSH6P52701 SATB1-217ENST00000493952 626 ntTSL 3 BASIC23.67■■□□□ 1.38
MSH6P52701 STOM-203ENST00000538954 1257 ntTSL 5 BASIC23.67■■□□□ 1.38
MSH6P52701 POLE2-203ENST00000553805 496 ntTSL 2 BASIC23.67■■□□□ 1.38
MSH6P52701 NAA38-206ENST00000576384 424 ntTSL 2 BASIC23.67■■□□□ 1.38
MSH6P52701 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC23.67■■□□□ 1.38
MSH6P52701 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC23.67■■□□□ 1.38
MSH6P52701 AC018529.1-201ENST00000613063 361 ntBASIC23.67■■□□□ 1.38
MSH6P52701 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
MSH6P52701 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
MSH6P52701 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC23.67■■□□□ 1.38
MSH6P52701 AC007541.1-201ENST00000570282 1469 ntBASIC23.67■■□□□ 1.38
MSH6P52701 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
MSH6P52701 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
MSH6P52701 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
MSH6P52701 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
MSH6P52701 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
MSH6P52701 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
MSH6P52701 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
MSH6P52701 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC23.67■■□□□ 1.38
MSH6P52701 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC23.66■■□□□ 1.38
MSH6P52701 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
MSH6P52701 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
MSH6P52701 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
MSH6P52701 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
MSH6P52701 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
MSH6P52701 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC23.66■■□□□ 1.38
MSH6P52701 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC23.66■■□□□ 1.38
MSH6P52701 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
MSH6P52701 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC23.66■■□□□ 1.38
MSH6P52701 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC23.66■■□□□ 1.38
MSH6P52701 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC23.66■■□□□ 1.38
MSH6P52701 AC008738.7-201ENST00000609744 511 ntBASIC23.66■■□□□ 1.38
MSH6P52701 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
MSH6P52701 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
MSH6P52701 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC23.66■■□□□ 1.38
MSH6P52701 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC23.66■■□□□ 1.38
MSH6P52701 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
MSH6P52701 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
MSH6P52701 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC23.66■■□□□ 1.38
MSH6P52701 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC23.66■■□□□ 1.38
MSH6P52701 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC23.66■■□□□ 1.38
MSH6P52701 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
MSH6P52701 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC23.66■■□□□ 1.38
MSH6P52701 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
MSH6P52701 AL512384.1-201ENST00000406683 331 ntBASIC23.65■■□□□ 1.38
MSH6P52701 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
MSH6P52701 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC23.65■■□□□ 1.38
MSH6P52701 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC23.65■■□□□ 1.38
MSH6P52701 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC23.65■■□□□ 1.38
MSH6P52701 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
MSH6P52701 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
MSH6P52701 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC23.65■■□□□ 1.38
MSH6P52701 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC23.65■■□□□ 1.38
MSH6P52701 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
MSH6P52701 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
MSH6P52701 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
MSH6P52701 AC073592.3-201ENST00000625118 1834 ntBASIC23.65■■□□□ 1.38
MSH6P52701 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
MSH6P52701 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
MSH6P52701 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
MSH6P52701 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC23.65■■□□□ 1.38
MSH6P52701 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
MSH6P52701 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC23.65■■□□□ 1.38
MSH6P52701 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
MSH6P52701 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
MSH6P52701 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
MSH6P52701 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
MSH6P52701 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
MSH6P52701 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
MSH6P52701 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
MSH6P52701 AP006294.1-201ENST00000415407 339 ntBASIC23.65■■□□□ 1.38
MSH6P52701 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
MSH6P52701 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
MSH6P52701 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
MSH6P52701 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC23.65■■□□□ 1.38
MSH6P52701 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
MSH6P52701 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC23.65■■□□□ 1.38
MSH6P52701 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
MSH6P52701 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
MSH6P52701 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms