Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC16.77■□□□□ 0.28
HOXC4P09017 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HOXC4P09017 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
HOXC4P09017 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.77■□□□□ 0.28
HOXC4P09017 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HOXC4P09017 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HOXC4P09017 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HOXC4P09017 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HOXC4P09017 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HOXC4P09017 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC16.77■□□□□ 0.28
HOXC4P09017 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC16.77■□□□□ 0.28
HOXC4P09017 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16.77■□□□□ 0.28
HOXC4P09017 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
HOXC4P09017 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC16.77■□□□□ 0.28
HOXC4P09017 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.77■□□□□ 0.28
HOXC4P09017 AL031432.2-201ENST00000566714 459 ntBASIC16.77■□□□□ 0.28
HOXC4P09017 AL928711.1-201ENST00000570165 459 ntBASIC16.77■□□□□ 0.28
HOXC4P09017 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC16.77■□□□□ 0.28
HOXC4P09017 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HOXC4P09017 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.77■□□□□ 0.28
HOXC4P09017 AP001160.2-201ENST00000596071 487 ntBASIC16.77■□□□□ 0.28
HOXC4P09017 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC16.77■□□□□ 0.28
HOXC4P09017 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HOXC4P09017 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HOXC4P09017 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC16.77■□□□□ 0.27
HOXC4P09017 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HOXC4P09017 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC16.77■□□□□ 0.27
HOXC4P09017 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HOXC4P09017 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HOXC4P09017 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
HOXC4P09017 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HOXC4P09017 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
HOXC4P09017 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
HOXC4P09017 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HOXC4P09017 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.77■□□□□ 0.27
HOXC4P09017 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.76■□□□□ 0.27
HOXC4P09017 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
HOXC4P09017 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HOXC4P09017 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HOXC4P09017 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.76■□□□□ 0.27
HOXC4P09017 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HOXC4P09017 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HOXC4P09017 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HOXC4P09017 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC16.76■□□□□ 0.27
HOXC4P09017 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HOXC4P09017 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
HOXC4P09017 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC16.76■□□□□ 0.27
HOXC4P09017 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.76■□□□□ 0.27
HOXC4P09017 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HOXC4P09017 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HOXC4P09017 NEK7-201ENST00000367383 586 ntTSL 2 BASIC16.76■□□□□ 0.27
HOXC4P09017 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
HOXC4P09017 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC16.76■□□□□ 0.27
HOXC4P09017 ALG1L5P-201ENST00000482043 771 ntBASIC16.76■□□□□ 0.27
HOXC4P09017 NMU-203ENST00000507338 658 ntTSL 3 BASIC16.76■□□□□ 0.27
HOXC4P09017 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HOXC4P09017 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
HOXC4P09017 AP002472.1-201ENST00000577490 586 ntBASIC16.76■□□□□ 0.27
HOXC4P09017 MIR4469-201ENST00000583919 79 ntBASIC16.76■□□□□ 0.27
HOXC4P09017 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC16.76■□□□□ 0.27
HOXC4P09017 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC16.76■□□□□ 0.27
HOXC4P09017 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HOXC4P09017 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HOXC4P09017 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HOXC4P09017 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HOXC4P09017 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.76■□□□□ 0.27
HOXC4P09017 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC16.76■□□□□ 0.27
HOXC4P09017 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HOXC4P09017 TOP3BP1-201ENST00000420768 1380 ntBASIC16.76■□□□□ 0.27
HOXC4P09017 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HOXC4P09017 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HOXC4P09017 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.75■□□□□ 0.27
HOXC4P09017 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.75■□□□□ 0.27
HOXC4P09017 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.75■□□□□ 0.27
HOXC4P09017 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HOXC4P09017 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HOXC4P09017 AL353732.1-201ENST00000569618 1459 ntBASIC16.75■□□□□ 0.27
HOXC4P09017 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HOXC4P09017 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HOXC4P09017 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
HOXC4P09017 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HOXC4P09017 AC254562.1-201ENST00000417586 456 ntBASIC16.75■□□□□ 0.27
HOXC4P09017 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC16.75■□□□□ 0.27
HOXC4P09017 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC16.75■□□□□ 0.27
HOXC4P09017 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC16.75■□□□□ 0.27
HOXC4P09017 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HOXC4P09017 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC16.75■□□□□ 0.27
HOXC4P09017 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC16.75■□□□□ 0.27
HOXC4P09017 DUX4L17-201ENST00000557360 1267 ntBASIC16.75■□□□□ 0.27
HOXC4P09017 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.75■□□□□ 0.27
HOXC4P09017 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.75■□□□□ 0.27
HOXC4P09017 CITED2-204ENST00000618718 901 ntTSL 2 BASIC16.75■□□□□ 0.27
HOXC4P09017 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
HOXC4P09017 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HOXC4P09017 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
HOXC4P09017 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HOXC4P09017 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HOXC4P09017 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HOXC4P09017 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.75■□□□□ 0.27
HOXC4P09017 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms