Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 AL121772.3-201ENST00000610840 674 ntBASIC20■□□□□ 0.79
CTDNEP1O95476 AL355877.3-201ENST00000622820 899 ntBASIC20■□□□□ 0.79
CTDNEP1O95476 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CTDNEP1O95476 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
CTDNEP1O95476 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CTDNEP1O95476 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC20■□□□□ 0.79
CTDNEP1O95476 HNRNPRP1-201ENST00000453465 1695 ntBASIC20■□□□□ 0.79
CTDNEP1O95476 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC20■□□□□ 0.79
CTDNEP1O95476 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC20■□□□□ 0.79
CTDNEP1O95476 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CTDNEP1O95476 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CTDNEP1O95476 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC19.99■□□□□ 0.79
CTDNEP1O95476 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CTDNEP1O95476 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CTDNEP1O95476 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CTDNEP1O95476 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC19.99■□□□□ 0.79
CTDNEP1O95476 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CTDNEP1O95476 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC19.99■□□□□ 0.79
CTDNEP1O95476 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC19.99■□□□□ 0.79
CTDNEP1O95476 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CTDNEP1O95476 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CTDNEP1O95476 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CTDNEP1O95476 DFFB-203ENST00000341385 572 ntTSL 5 BASIC19.99■□□□□ 0.79
CTDNEP1O95476 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
CTDNEP1O95476 UNC93B7-201ENST00000509439 705 ntBASIC19.99■□□□□ 0.79
CTDNEP1O95476 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC19.99■□□□□ 0.79
CTDNEP1O95476 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC19.99■□□□□ 0.79
CTDNEP1O95476 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC19.99■□□□□ 0.79
CTDNEP1O95476 PAM16-208ENST00000573553 722 ntTSL 2 BASIC19.99■□□□□ 0.79
CTDNEP1O95476 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CTDNEP1O95476 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC19.99■□□□□ 0.79
CTDNEP1O95476 REXO1L6P-202ENST00000619970 1078 ntBASIC19.99■□□□□ 0.79
CTDNEP1O95476 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC19.99■□□□□ 0.79
CTDNEP1O95476 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CTDNEP1O95476 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
CTDNEP1O95476 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC19.99■□□□□ 0.79
CTDNEP1O95476 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CTDNEP1O95476 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.99■□□□□ 0.79
CTDNEP1O95476 PCDHB17P-201ENST00000539533 2393 ntBASIC19.99■□□□□ 0.79
CTDNEP1O95476 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC19.99■□□□□ 0.79
CTDNEP1O95476 AL590787.1-201ENST00000568856 1315 ntBASIC19.99■□□□□ 0.79
CTDNEP1O95476 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
CTDNEP1O95476 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC19.99■□□□□ 0.79
CTDNEP1O95476 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CTDNEP1O95476 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
CTDNEP1O95476 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CTDNEP1O95476 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CTDNEP1O95476 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CTDNEP1O95476 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CTDNEP1O95476 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
CTDNEP1O95476 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
CTDNEP1O95476 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CTDNEP1O95476 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CTDNEP1O95476 AC092171.3-201ENST00000610122 2651 ntBASIC19.98■□□□□ 0.79
CTDNEP1O95476 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CTDNEP1O95476 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CTDNEP1O95476 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CTDNEP1O95476 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC19.98■□□□□ 0.79
CTDNEP1O95476 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CTDNEP1O95476 AF238378.1-201ENST00000526806 358 ntBASIC19.98■□□□□ 0.79
CTDNEP1O95476 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC19.98■□□□□ 0.79
CTDNEP1O95476 AC091304.2-201ENST00000564639 760 ntBASIC19.98■□□□□ 0.79
CTDNEP1O95476 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
CTDNEP1O95476 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
CTDNEP1O95476 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC19.98■□□□□ 0.79
CTDNEP1O95476 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC19.98■□□□□ 0.79
CTDNEP1O95476 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.98■□□□□ 0.79
CTDNEP1O95476 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC19.98■□□□□ 0.79
CTDNEP1O95476 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CTDNEP1O95476 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC19.98■□□□□ 0.79
CTDNEP1O95476 AL356309.3-201ENST00000624132 1934 ntBASIC19.98■□□□□ 0.79
CTDNEP1O95476 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
CTDNEP1O95476 AC124067.4-201ENST00000519691 2379 ntBASIC19.98■□□□□ 0.79
CTDNEP1O95476 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CTDNEP1O95476 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CTDNEP1O95476 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
CTDNEP1O95476 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
CTDNEP1O95476 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CTDNEP1O95476 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CTDNEP1O95476 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC19.97■□□□□ 0.79
CTDNEP1O95476 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC19.97■□□□□ 0.79
CTDNEP1O95476 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CTDNEP1O95476 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
CTDNEP1O95476 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC19.97■□□□□ 0.79
CTDNEP1O95476 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CTDNEP1O95476 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
CTDNEP1O95476 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC19.97■□□□□ 0.79
CTDNEP1O95476 TPM1-218ENST00000559281 851 ntTSL 5 BASIC19.97■□□□□ 0.79
CTDNEP1O95476 PRELID1P1-202ENST00000567272 903 ntBASIC19.97■□□□□ 0.79
CTDNEP1O95476 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC19.97■□□□□ 0.79
CTDNEP1O95476 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC19.97■□□□□ 0.79
CTDNEP1O95476 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CTDNEP1O95476 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC19.97■□□□□ 0.79
CTDNEP1O95476 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CTDNEP1O95476 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CTDNEP1O95476 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CTDNEP1O95476 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
CTDNEP1O95476 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CTDNEP1O95476 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC19.97■□□□□ 0.79
CTDNEP1O95476 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms