Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC14.03□□□□□ -0.16
FOXA2Q9Y261 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
FOXA2Q9Y261 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC14.03□□□□□ -0.16
FOXA2Q9Y261 AC092329.2-201ENST00000598402 547 ntBASIC14.03□□□□□ -0.16
FOXA2Q9Y261 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC14.03□□□□□ -0.16
FOXA2Q9Y261 AC092119.3-201ENST00000612618 583 ntBASIC14.03□□□□□ -0.16
FOXA2Q9Y261 NPAP1P7-201ENST00000613027 823 ntBASIC14.03□□□□□ -0.16
FOXA2Q9Y261 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA2Q9Y261 AC010460.3-201ENST00000511359 1579 ntBASIC14.03□□□□□ -0.16
FOXA2Q9Y261 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA2Q9Y261 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
FOXA2Q9Y261 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA2Q9Y261 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA2Q9Y261 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA2Q9Y261 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA2Q9Y261 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA2Q9Y261 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA2Q9Y261 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA2Q9Y261 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA2Q9Y261 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC14.03□□□□□ -0.16
FOXA2Q9Y261 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC14.03□□□□□ -0.16
FOXA2Q9Y261 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
FOXA2Q9Y261 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
FOXA2Q9Y261 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
FOXA2Q9Y261 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC14.02□□□□□ -0.16
FOXA2Q9Y261 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
FOXA2Q9Y261 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC14.02□□□□□ -0.16
FOXA2Q9Y261 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
FOXA2Q9Y261 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
FOXA2Q9Y261 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
FOXA2Q9Y261 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
FOXA2Q9Y261 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC14.02□□□□□ -0.16
FOXA2Q9Y261 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
FOXA2Q9Y261 AC093525.9-201ENST00000624961 1746 ntBASIC14.02□□□□□ -0.16
FOXA2Q9Y261 OS9-205ENST00000413095 1660 ntTSL 2 BASIC14.02□□□□□ -0.16
FOXA2Q9Y261 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
FOXA2Q9Y261 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
FOXA2Q9Y261 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
FOXA2Q9Y261 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
FOXA2Q9Y261 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
FOXA2Q9Y261 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
FOXA2Q9Y261 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC14.02□□□□□ -0.16
FOXA2Q9Y261 AC233702.3-201ENST00000578656 1387 ntBASIC14.02□□□□□ -0.17
FOXA2Q9Y261 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA2Q9Y261 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA2Q9Y261 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA2Q9Y261 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.17
FOXA2Q9Y261 PPIH-202ENST00000372549 327 ntTSL 3 BASIC14.02□□□□□ -0.17
FOXA2Q9Y261 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
FOXA2Q9Y261 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC14.02□□□□□ -0.17
FOXA2Q9Y261 PON3-205ENST00000451904 1053 ntTSL 3 BASIC14.02□□□□□ -0.17
FOXA2Q9Y261 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC14.02□□□□□ -0.17
FOXA2Q9Y261 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC14.02□□□□□ -0.17
FOXA2Q9Y261 ABR-204ENST00000543210 1049 ntTSL 2 BASIC14.02□□□□□ -0.17
FOXA2Q9Y261 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA2Q9Y261 TPSP2-201ENST00000561760 610 ntBASIC14.02□□□□□ -0.17
FOXA2Q9Y261 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC14.02□□□□□ -0.17
FOXA2Q9Y261 ABR-217ENST00000572441 563 ntTSL 4 BASIC14.02□□□□□ -0.17
FOXA2Q9Y261 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC14.02□□□□□ -0.17
FOXA2Q9Y261 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA2Q9Y261 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
FOXA2Q9Y261 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA2Q9Y261 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA2Q9Y261 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC14.02□□□□□ -0.17
FOXA2Q9Y261 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA2Q9Y261 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
FOXA2Q9Y261 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.17
FOXA2Q9Y261 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA2Q9Y261 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA2Q9Y261 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA2Q9Y261 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 AC046185.3-201ENST00000623228 1824 ntBASIC14.01□□□□□ -0.17
FOXA2Q9Y261 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 SLC25A1P3-201ENST00000395415 828 ntBASIC14.01□□□□□ -0.17
FOXA2Q9Y261 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 HCG4P8-203ENST00000443049 980 ntBASIC14.01□□□□□ -0.17
FOXA2Q9Y261 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 IGHV3-52-201ENST00000519770 353 ntBASIC14.01□□□□□ -0.17
FOXA2Q9Y261 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 AL353801.3-201ENST00000609898 542 ntBASIC14.01□□□□□ -0.17
FOXA2Q9Y261 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC14.01□□□□□ -0.17
FOXA2Q9Y261 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms