Protein–RNA interactions for Protein: Q9NRR8

CDC42SE1, CDC42 small effector protein 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1Q9NRR8 STAG3-206ENST00000426455 4450 ntAPPRIS P3 TSL 1 (best) BASIC8.82□□□□□ -1
CDC42SE1Q9NRR8 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC8.82□□□□□ -1
CDC42SE1Q9NRR8 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC8.82□□□□□ -1
CDC42SE1Q9NRR8 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC8.82□□□□□ -1
CDC42SE1Q9NRR8 EFR3B-205ENST00000405108 2432 ntTSL 1 (best) BASIC8.82□□□□□ -1
CDC42SE1Q9NRR8 C5orf56-206ENST00000612967 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC8.82□□□□□ -1
CDC42SE1Q9NRR8 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
CDC42SE1Q9NRR8 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC8.82□□□□□ -1
CDC42SE1Q9NRR8 AC068075.1-201ENST00000519714 1832 ntTSL 1 (best) BASIC8.82□□□□□ -1
CDC42SE1Q9NRR8 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
CDC42SE1Q9NRR8 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
CDC42SE1Q9NRR8 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC8.82□□□□□ -1
CDC42SE1Q9NRR8 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC8.82□□□□□ -1
CDC42SE1Q9NRR8 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC8.82□□□□□ -1
CDC42SE1Q9NRR8 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
CDC42SE1Q9NRR8 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC8.82□□□□□ -1
CDC42SE1Q9NRR8 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC8.82□□□□□ -1
CDC42SE1Q9NRR8 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC8.82□□□□□ -1
CDC42SE1Q9NRR8 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC8.82□□□□□ -1
CDC42SE1Q9NRR8 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC8.82□□□□□ -1
CDC42SE1Q9NRR8 CNTNAP1-201ENST00000264638 5276 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
CDC42SE1Q9NRR8 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 SULF1-202ENST00000402687 4891 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 JADE1-209ENST00000511647 3560 ntAPPRIS ALT2 TSL 1 (best) BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 SLC4A5-206ENST00000423644 6185 ntAPPRIS ALT2 TSL 5 BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 OS9-204ENST00000389146 2091 ntTSL 2 BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 ZNF815P-204ENST00000434898 1737 ntBASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 SETD8P1-201ENST00000623146 1180 ntBASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 SUCO-202ENST00000367723 5916 ntTSL 1 (best) BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC8.81□□□□□ -1
CDC42SE1Q9NRR8 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC8.8□□□□□ -1
CDC42SE1Q9NRR8 CTBP1-AS2-206ENST00000581398 5652 ntBASIC8.8□□□□□ -1
CDC42SE1Q9NRR8 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC8.8□□□□□ -1
CDC42SE1Q9NRR8 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC8.8□□□□□ -1
CDC42SE1Q9NRR8 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
CDC42SE1Q9NRR8 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC8.8□□□□□ -1
CDC42SE1Q9NRR8 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC8.8□□□□□ -1
CDC42SE1Q9NRR8 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC8.8□□□□□ -1
CDC42SE1Q9NRR8 KRT18P55-202ENST00000578578 1546 ntBASIC8.8□□□□□ -1
CDC42SE1Q9NRR8 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC8.8□□□□□ -1
CDC42SE1Q9NRR8 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC8.8□□□□□ -1
CDC42SE1Q9NRR8 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC8.8□□□□□ -1
CDC42SE1Q9NRR8 GPC4-201ENST00000370828 4960 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
CDC42SE1Q9NRR8 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC8.8□□□□□ -1
CDC42SE1Q9NRR8 UHMK1-203ENST00000538489 8446 ntTSL 1 (best) BASIC8.8□□□□□ -1
CDC42SE1Q9NRR8 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC8.8□□□□□ -1
CDC42SE1Q9NRR8 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
CDC42SE1Q9NRR8 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC8.8□□□□□ -1
CDC42SE1Q9NRR8 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
CDC42SE1Q9NRR8 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
CDC42SE1Q9NRR8 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC8.8□□□□□ -1
CDC42SE1Q9NRR8 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC8.8□□□□□ -1
CDC42SE1Q9NRR8 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC8.8□□□□□ -1
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms