Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MMP28Q9H239 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
MMP28Q9H239 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
MMP28Q9H239 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
MMP28Q9H239 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MMP28Q9H239 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MMP28Q9H239 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
MMP28Q9H239 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MMP28Q9H239 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MMP28Q9H239 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC15.35■□□□□ 0.05
MMP28Q9H239 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC15.35■□□□□ 0.05
MMP28Q9H239 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MMP28Q9H239 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MMP28Q9H239 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MMP28Q9H239 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
MMP28Q9H239 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC15.35■□□□□ 0.05
MMP28Q9H239 SLC25A1P2-201ENST00000430693 912 ntBASIC15.35■□□□□ 0.05
MMP28Q9H239 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC15.35■□□□□ 0.05
MMP28Q9H239 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC15.35■□□□□ 0.05
MMP28Q9H239 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
MMP28Q9H239 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
MMP28Q9H239 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MMP28Q9H239 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC15.35■□□□□ 0.05
MMP28Q9H239 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.35■□□□□ 0.05
MMP28Q9H239 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MMP28Q9H239 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
MMP28Q9H239 AC144831.1-201ENST00000573312 2656 ntBASIC15.35■□□□□ 0.05
MMP28Q9H239 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MMP28Q9H239 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
MMP28Q9H239 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC15.35■□□□□ 0.05
MMP28Q9H239 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC15.35■□□□□ 0.05
MMP28Q9H239 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC15.35■□□□□ 0.05
MMP28Q9H239 HLA-J-201ENST00000462773 1622 ntBASIC15.35■□□□□ 0.05
MMP28Q9H239 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC15.35■□□□□ 0.05
MMP28Q9H239 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
MMP28Q9H239 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
MMP28Q9H239 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MMP28Q9H239 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC15.35■□□□□ 0.05
MMP28Q9H239 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MMP28Q9H239 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
MMP28Q9H239 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
MMP28Q9H239 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
MMP28Q9H239 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC15.34■□□□□ 0.05
MMP28Q9H239 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
MMP28Q9H239 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
MMP28Q9H239 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
MMP28Q9H239 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
MMP28Q9H239 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
MMP28Q9H239 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
MMP28Q9H239 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MMP28Q9H239 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
MMP28Q9H239 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC15.34■□□□□ 0.05
MMP28Q9H239 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC15.34■□□□□ 0.05
MMP28Q9H239 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC15.34■□□□□ 0.05
MMP28Q9H239 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MMP28Q9H239 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC15.34■□□□□ 0.05
MMP28Q9H239 CCR12P-201ENST00000446203 998 ntBASIC15.34■□□□□ 0.05
MMP28Q9H239 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC15.34■□□□□ 0.05
MMP28Q9H239 C2orf69P3-201ENST00000565542 1120 ntBASIC15.34■□□□□ 0.05
MMP28Q9H239 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC15.34■□□□□ 0.05
MMP28Q9H239 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MMP28Q9H239 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC15.34■□□□□ 0.05
MMP28Q9H239 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC15.34■□□□□ 0.05
MMP28Q9H239 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
MMP28Q9H239 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MMP28Q9H239 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MMP28Q9H239 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
MMP28Q9H239 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC15.34■□□□□ 0.05
MMP28Q9H239 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
MMP28Q9H239 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
MMP28Q9H239 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC15.34■□□□□ 0.05
MMP28Q9H239 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
MMP28Q9H239 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.05
MMP28Q9H239 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC15.33■□□□□ 0.05
MMP28Q9H239 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
MMP28Q9H239 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
MMP28Q9H239 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
MMP28Q9H239 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC15.33■□□□□ 0.05
MMP28Q9H239 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.05
MMP28Q9H239 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC15.33■□□□□ 0.05
MMP28Q9H239 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC15.33■□□□□ 0.05
MMP28Q9H239 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
MMP28Q9H239 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC15.33■□□□□ 0.05
MMP28Q9H239 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
MMP28Q9H239 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
MMP28Q9H239 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
MMP28Q9H239 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC15.33■□□□□ 0.04
MMP28Q9H239 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC15.33■□□□□ 0.04
MMP28Q9H239 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
MMP28Q9H239 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
MMP28Q9H239 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
MMP28Q9H239 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC15.33■□□□□ 0.04
MMP28Q9H239 HIST1H2APS4-201ENST00000362070 348 ntBASIC15.33■□□□□ 0.04
MMP28Q9H239 BUB3-202ENST00000368859 667 ntTSL 3 BASIC15.33■□□□□ 0.04
MMP28Q9H239 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
MMP28Q9H239 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC15.33■□□□□ 0.04
MMP28Q9H239 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
MMP28Q9H239 TMPOP1-202ENST00000424642 1267 ntBASIC15.33■□□□□ 0.04
MMP28Q9H239 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
MMP28Q9H239 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms