Protein–RNA interactions for Protein: Q9H1A7

POLR2J3, DNA-directed RNA polymerase II subunit RPB11-b2, humanhuman

Known RBP Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3Q9H1A7 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
POLR2J3Q9H1A7 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.05■□□□□ 0.16
POLR2J3Q9H1A7 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
POLR2J3Q9H1A7 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
POLR2J3Q9H1A7 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.05■□□□□ 0.16
POLR2J3Q9H1A7 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
POLR2J3Q9H1A7 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
POLR2J3Q9H1A7 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
POLR2J3Q9H1A7 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
POLR2J3Q9H1A7 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
POLR2J3Q9H1A7 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
POLR2J3Q9H1A7 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.05■□□□□ 0.16
POLR2J3Q9H1A7 PCDHB19P-201ENST00000570871 2371 ntBASIC16.05■□□□□ 0.16
POLR2J3Q9H1A7 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
POLR2J3Q9H1A7 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
POLR2J3Q9H1A7 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
POLR2J3Q9H1A7 AC010460.3-201ENST00000511359 1579 ntBASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 AC103564.2-201ENST00000432853 1299 ntBASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 RNF126P1-202ENST00000569893 925 ntBASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
POLR2J3Q9H1A7 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 AC063952.2-201ENST00000498792 1227 ntBASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 LINC01023-201ENST00000606054 436 ntBASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 DFFB-212ENST00000625756 649 ntTSL 5 BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
POLR2J3Q9H1A7 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
POLR2J3Q9H1A7 LINC02012-201ENST00000608206 1725 ntBASIC16.02■□□□□ 0.16
POLR2J3Q9H1A7 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
POLR2J3Q9H1A7 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
POLR2J3Q9H1A7 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
POLR2J3Q9H1A7 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
POLR2J3Q9H1A7 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
POLR2J3Q9H1A7 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
POLR2J3Q9H1A7 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.02■□□□□ 0.16
POLR2J3Q9H1A7 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
POLR2J3Q9H1A7 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms