Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 REXO1L3P-201ENST00000622202 1288 ntBASIC17.32■□□□□ 0.36
HMGB4Q8WW32 AC105339.1-204ENST00000636249 355 ntBASIC17.32■□□□□ 0.36
HMGB4Q8WW32 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB4Q8WW32 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB4Q8WW32 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB4Q8WW32 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB4Q8WW32 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB4Q8WW32 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.31■□□□□ 0.36
HMGB4Q8WW32 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.31■□□□□ 0.36
HMGB4Q8WW32 AC090340.1-201ENST00000620778 4980 ntBASIC17.31■□□□□ 0.36
HMGB4Q8WW32 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
HMGB4Q8WW32 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC17.31■□□□□ 0.36
HMGB4Q8WW32 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB4Q8WW32 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB4Q8WW32 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB4Q8WW32 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB4Q8WW32 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB4Q8WW32 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC17.31■□□□□ 0.36
HMGB4Q8WW32 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC17.31■□□□□ 0.36
HMGB4Q8WW32 AC112191.1-201ENST00000523689 701 ntBASIC17.31■□□□□ 0.36
HMGB4Q8WW32 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC17.31■□□□□ 0.36
HMGB4Q8WW32 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
HMGB4Q8WW32 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC17.31■□□□□ 0.36
HMGB4Q8WW32 AC090164.3-201ENST00000610780 2143 ntBASIC17.31■□□□□ 0.36
HMGB4Q8WW32 ACTL9-202ENST00000612068 1252 ntBASIC17.31■□□□□ 0.36
HMGB4Q8WW32 AC093512.1-201ENST00000617969 520 ntBASIC17.31■□□□□ 0.36
HMGB4Q8WW32 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB4Q8WW32 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
HMGB4Q8WW32 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB4Q8WW32 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB4Q8WW32 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
HMGB4Q8WW32 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.31■□□□□ 0.36
HMGB4Q8WW32 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC17.31■□□□□ 0.36
HMGB4Q8WW32 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB4Q8WW32 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB4Q8WW32 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB4Q8WW32 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.31■□□□□ 0.36
HMGB4Q8WW32 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 DAD1-205ENST00000543337 501 ntTSL 3 BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 AC022145.2-201ENST00000598203 171 ntBASIC17.3■□□□□ 0.36
HMGB4Q8WW32 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGB4Q8WW32 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB4Q8WW32 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB4Q8WW32 REXO1L11P-201ENST00000620964 1927 ntBASIC17.29■□□□□ 0.36
HMGB4Q8WW32 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB4Q8WW32 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.29■□□□□ 0.36
HMGB4Q8WW32 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB4Q8WW32 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB4Q8WW32 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
HMGB4Q8WW32 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms