Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 AC140113.3-201ENST00000605663 199 ntBASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 PCDHB17P-201ENST00000539533 2393 ntBASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 AC009949.1-201ENST00000623048 1830 ntBASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
ZNF540Q8NDQ6 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 COPE-203ENST00000351079 907 ntTSL 2 BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 INGX-201ENST00000359239 846 ntBASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 TSPY5P-201ENST00000426936 936 ntBASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 AC091076.1-201ENST00000610741 619 ntBASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 TSPY26P-202ENST00000565928 3884 ntBASIC16.09■□□□□ 0.17
ZNF540Q8NDQ6 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms