Protein–RNA interactions for Protein: Q6P9H4

CNKSR3, Connector enhancer of kinase suppressor of ras 3, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3Q6P9H4 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
CNKSR3Q6P9H4 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CNKSR3Q6P9H4 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.48■□□□□ 0.55
CNKSR3Q6P9H4 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.48■□□□□ 0.55
CNKSR3Q6P9H4 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CNKSR3Q6P9H4 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
CNKSR3Q6P9H4 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CNKSR3Q6P9H4 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CNKSR3Q6P9H4 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC18.48■□□□□ 0.55
CNKSR3Q6P9H4 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
CNKSR3Q6P9H4 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
CNKSR3Q6P9H4 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC18.48■□□□□ 0.55
CNKSR3Q6P9H4 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CNKSR3Q6P9H4 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC18.48■□□□□ 0.55
CNKSR3Q6P9H4 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CNKSR3Q6P9H4 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC18.48■□□□□ 0.55
CNKSR3Q6P9H4 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC18.48■□□□□ 0.55
CNKSR3Q6P9H4 AP000974.1-201ENST00000623909 2387 ntBASIC18.48■□□□□ 0.55
CNKSR3Q6P9H4 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CNKSR3Q6P9H4 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC18.48■□□□□ 0.55
CNKSR3Q6P9H4 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CNKSR3Q6P9H4 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.48■□□□□ 0.55
CNKSR3Q6P9H4 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CNKSR3Q6P9H4 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CNKSR3Q6P9H4 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CNKSR3Q6P9H4 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 RAC2-204ENST00000406508 893 ntTSL 5 BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 AL512638.1-201ENST00000457493 794 ntBASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 AC069120.2-201ENST00000524091 540 ntBASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 GATD1-206ENST00000526325 756 ntTSL 5 BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 MIR6080-201ENST00000617359 66 ntBASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 WASH6P-202ENST00000359512 1437 ntBASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CNKSR3Q6P9H4 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 CCDC74BP1-201ENST00000508880 1123 ntBASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
CNKSR3Q6P9H4 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CNKSR3Q6P9H4 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms