Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
KRT39Q6A163 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
KRT39Q6A163 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
KRT39Q6A163 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC18.71■□□□□ 0.58
KRT39Q6A163 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
KRT39Q6A163 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
KRT39Q6A163 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
KRT39Q6A163 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
KRT39Q6A163 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
KRT39Q6A163 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
KRT39Q6A163 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
KRT39Q6A163 AC097637.2-201ENST00000624096 1997 ntBASIC18.7■□□□□ 0.58
KRT39Q6A163 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
KRT39Q6A163 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
KRT39Q6A163 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
KRT39Q6A163 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC18.7■□□□□ 0.58
KRT39Q6A163 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
KRT39Q6A163 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC18.7■□□□□ 0.58
KRT39Q6A163 EGFEM1P-202ENST00000431685 1563 ntBASIC18.7■□□□□ 0.58
KRT39Q6A163 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC18.7■□□□□ 0.58
KRT39Q6A163 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
KRT39Q6A163 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18.7■□□□□ 0.58
KRT39Q6A163 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC18.7■□□□□ 0.58
KRT39Q6A163 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
KRT39Q6A163 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC18.7■□□□□ 0.58
KRT39Q6A163 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.7■□□□□ 0.58
KRT39Q6A163 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
KRT39Q6A163 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
KRT39Q6A163 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
KRT39Q6A163 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
KRT39Q6A163 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
KRT39Q6A163 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC18.7■□□□□ 0.58
KRT39Q6A163 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
KRT39Q6A163 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
KRT39Q6A163 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
KRT39Q6A163 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
KRT39Q6A163 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
KRT39Q6A163 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
KRT39Q6A163 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC18.69■□□□□ 0.58
KRT39Q6A163 GID4-202ENST00000376345 1391 ntTSL 3 BASIC18.69■□□□□ 0.58
KRT39Q6A163 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
KRT39Q6A163 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
KRT39Q6A163 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
KRT39Q6A163 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC18.69■□□□□ 0.58
KRT39Q6A163 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC18.69■□□□□ 0.58
KRT39Q6A163 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
KRT39Q6A163 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
KRT39Q6A163 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
KRT39Q6A163 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC18.69■□□□□ 0.58
KRT39Q6A163 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
KRT39Q6A163 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
KRT39Q6A163 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
KRT39Q6A163 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
KRT39Q6A163 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
KRT39Q6A163 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
KRT39Q6A163 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
KRT39Q6A163 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
KRT39Q6A163 UNC93B7-201ENST00000509439 705 ntBASIC18.69■□□□□ 0.58
KRT39Q6A163 AF238378.1-201ENST00000526806 358 ntBASIC18.69■□□□□ 0.58
KRT39Q6A163 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
KRT39Q6A163 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
KRT39Q6A163 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC18.69■□□□□ 0.58
KRT39Q6A163 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
KRT39Q6A163 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
KRT39Q6A163 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
KRT39Q6A163 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
KRT39Q6A163 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
KRT39Q6A163 AC080080.1-201ENST00000625121 2420 ntBASIC18.69■□□□□ 0.58
KRT39Q6A163 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
KRT39Q6A163 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
KRT39Q6A163 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
KRT39Q6A163 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
KRT39Q6A163 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC18.68■□□□□ 0.58
KRT39Q6A163 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
KRT39Q6A163 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
KRT39Q6A163 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
KRT39Q6A163 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
KRT39Q6A163 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
KRT39Q6A163 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
KRT39Q6A163 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
KRT39Q6A163 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC18.68■□□□□ 0.58
KRT39Q6A163 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
KRT39Q6A163 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
KRT39Q6A163 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
KRT39Q6A163 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
KRT39Q6A163 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC18.68■□□□□ 0.58
KRT39Q6A163 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
KRT39Q6A163 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
KRT39Q6A163 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
KRT39Q6A163 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC18.68■□□□□ 0.58
KRT39Q6A163 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC18.68■□□□□ 0.58
KRT39Q6A163 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC18.68■□□□□ 0.58
KRT39Q6A163 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
KRT39Q6A163 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
KRT39Q6A163 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
KRT39Q6A163 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
KRT39Q6A163 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
KRT39Q6A163 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC18.68■□□□□ 0.58
KRT39Q6A163 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
KRT39Q6A163 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms