Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
SHROOM1Q2M3G4 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SHROOM1Q2M3G4 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
SHROOM1Q2M3G4 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SHROOM1Q2M3G4 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
SHROOM1Q2M3G4 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
SHROOM1Q2M3G4 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHROOM1Q2M3G4 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SHROOM1Q2M3G4 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
SHROOM1Q2M3G4 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SHROOM1Q2M3G4 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHROOM1Q2M3G4 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHROOM1Q2M3G4 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC20.09■□□□□ 0.81
SHROOM1Q2M3G4 SLC25A1P3-201ENST00000395415 828 ntBASIC20.09■□□□□ 0.81
SHROOM1Q2M3G4 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SHROOM1Q2M3G4 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC20.09■□□□□ 0.81
SHROOM1Q2M3G4 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC20.09■□□□□ 0.81
SHROOM1Q2M3G4 AC093520.2-201ENST00000561830 333 ntBASIC20.09■□□□□ 0.81
SHROOM1Q2M3G4 IGHV3OR16-6-201ENST00000568775 360 ntBASIC20.09■□□□□ 0.81
SHROOM1Q2M3G4 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC20.09■□□□□ 0.81
SHROOM1Q2M3G4 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHROOM1Q2M3G4 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SHROOM1Q2M3G4 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC20.09■□□□□ 0.81
SHROOM1Q2M3G4 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHROOM1Q2M3G4 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SHROOM1Q2M3G4 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHROOM1Q2M3G4 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC20.09■□□□□ 0.81
SHROOM1Q2M3G4 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
SHROOM1Q2M3G4 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC20.09■□□□□ 0.81
SHROOM1Q2M3G4 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC20.08■□□□□ 0.81
SHROOM1Q2M3G4 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHROOM1Q2M3G4 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHROOM1Q2M3G4 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHROOM1Q2M3G4 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC20.08■□□□□ 0.81
SHROOM1Q2M3G4 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.81
SHROOM1Q2M3G4 AC018470.1-201ENST00000624790 3129 ntBASIC20.08■□□□□ 0.81
SHROOM1Q2M3G4 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHROOM1Q2M3G4 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC20.08■□□□□ 0.81
SHROOM1Q2M3G4 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHROOM1Q2M3G4 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHROOM1Q2M3G4 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHROOM1Q2M3G4 AC133963.1-201ENST00000504166 1679 ntBASIC20.08■□□□□ 0.81
SHROOM1Q2M3G4 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHROOM1Q2M3G4 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
SHROOM1Q2M3G4 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC20.08■□□□□ 0.81
SHROOM1Q2M3G4 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
SHROOM1Q2M3G4 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHROOM1Q2M3G4 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC20.08■□□□□ 0.81
SHROOM1Q2M3G4 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHROOM1Q2M3G4 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
SHROOM1Q2M3G4 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SHROOM1Q2M3G4 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
SHROOM1Q2M3G4 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SHROOM1Q2M3G4 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
SHROOM1Q2M3G4 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SHROOM1Q2M3G4 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.07■□□□□ 0.8
SHROOM1Q2M3G4 NOC2LP1-202ENST00000452600 2235 ntBASIC20.07■□□□□ 0.8
SHROOM1Q2M3G4 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHROOM1Q2M3G4 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.07■□□□□ 0.8
SHROOM1Q2M3G4 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHROOM1Q2M3G4 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC20.07■□□□□ 0.8
SHROOM1Q2M3G4 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHROOM1Q2M3G4 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC20.07■□□□□ 0.8
SHROOM1Q2M3G4 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHROOM1Q2M3G4 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SHROOM1Q2M3G4 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SHROOM1Q2M3G4 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHROOM1Q2M3G4 TSEN15P1-201ENST00000423257 515 ntBASIC20.07■□□□□ 0.8
SHROOM1Q2M3G4 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC20.07■□□□□ 0.8
SHROOM1Q2M3G4 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC20.07■□□□□ 0.8
SHROOM1Q2M3G4 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC20.07■□□□□ 0.8
SHROOM1Q2M3G4 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
SHROOM1Q2M3G4 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC20.07■□□□□ 0.8
SHROOM1Q2M3G4 AP000344.2-201ENST00000512987 629 ntBASIC20.07■□□□□ 0.8
SHROOM1Q2M3G4 AC109322.1-201ENST00000524499 1264 ntBASIC20.07■□□□□ 0.8
SHROOM1Q2M3G4 CCND1-203ENST00000536559 553 ntTSL 3 BASIC20.07■□□□□ 0.8
SHROOM1Q2M3G4 RPL28-205ENST00000558131 444 ntTSL 5 BASIC20.07■□□□□ 0.8
SHROOM1Q2M3G4 REXO1L3P-201ENST00000622202 1288 ntBASIC20.07■□□□□ 0.8
SHROOM1Q2M3G4 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SHROOM1Q2M3G4 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHROOM1Q2M3G4 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHROOM1Q2M3G4 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
SHROOM1Q2M3G4 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SHROOM1Q2M3G4 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC20.07■□□□□ 0.8
SHROOM1Q2M3G4 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHROOM1Q2M3G4 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHROOM1Q2M3G4 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHROOM1Q2M3G4 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHROOM1Q2M3G4 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC20.06■□□□□ 0.8
SHROOM1Q2M3G4 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
SHROOM1Q2M3G4 NEK7-201ENST00000367383 586 ntTSL 2 BASIC20.06■□□□□ 0.8
SHROOM1Q2M3G4 AL645939.2-201ENST00000427340 991 ntBASIC20.06■□□□□ 0.8
SHROOM1Q2M3G4 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SHROOM1Q2M3G4 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC20.06■□□□□ 0.8
SHROOM1Q2M3G4 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC20.06■□□□□ 0.8
SHROOM1Q2M3G4 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC20.06■□□□□ 0.8
SHROOM1Q2M3G4 MMP17-203ENST00000535004 719 ntTSL 3 BASIC20.06■□□□□ 0.8
SHROOM1Q2M3G4 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC20.06■□□□□ 0.8
SHROOM1Q2M3G4 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHROOM1Q2M3G4 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms