Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
RNF4P78317 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.04■□□□□ 0.16
RNF4P78317 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RNF4P78317 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC16.04■□□□□ 0.16
RNF4P78317 AC073621.1-201ENST00000392730 636 ntBASIC16.04■□□□□ 0.16
RNF4P78317 CENPM-204ENST00000402420 688 ntTSL 5 BASIC16.04■□□□□ 0.16
RNF4P78317 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC16.04■□□□□ 0.16
RNF4P78317 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RNF4P78317 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
RNF4P78317 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC16.04■□□□□ 0.16
RNF4P78317 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.04■□□□□ 0.16
RNF4P78317 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.04■□□□□ 0.16
RNF4P78317 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC16.04■□□□□ 0.16
RNF4P78317 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
RNF4P78317 AL356488.2-201ENST00000602755 427 ntBASIC16.04■□□□□ 0.16
RNF4P78317 AL353135.1-201ENST00000606729 504 ntBASIC16.04■□□□□ 0.16
RNF4P78317 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
RNF4P78317 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.04■□□□□ 0.16
RNF4P78317 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
RNF4P78317 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.04■□□□□ 0.16
RNF4P78317 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
RNF4P78317 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
RNF4P78317 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
RNF4P78317 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
RNF4P78317 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
RNF4P78317 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RNF4P78317 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RNF4P78317 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RNF4P78317 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.03■□□□□ 0.16
RNF4P78317 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RNF4P78317 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.03■□□□□ 0.16
RNF4P78317 FZD10-202ENST00000539839 3282 ntBASIC16.03■□□□□ 0.16
RNF4P78317 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
RNF4P78317 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.03■□□□□ 0.16
RNF4P78317 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
RNF4P78317 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
RNF4P78317 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RNF4P78317 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC16.03■□□□□ 0.16
RNF4P78317 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RNF4P78317 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.03■□□□□ 0.16
RNF4P78317 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
RNF4P78317 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.03■□□□□ 0.16
RNF4P78317 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
RNF4P78317 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.03■□□□□ 0.16
RNF4P78317 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.03■□□□□ 0.16
RNF4P78317 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC16.03■□□□□ 0.16
RNF4P78317 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RNF4P78317 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC16.03■□□□□ 0.16
RNF4P78317 AC120114.3-201ENST00000611923 658 ntBASIC16.03■□□□□ 0.16
RNF4P78317 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC16.03■□□□□ 0.16
RNF4P78317 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
RNF4P78317 AC006504.4-201ENST00000592118 1568 ntBASIC16.03■□□□□ 0.16
RNF4P78317 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.03■□□□□ 0.16
RNF4P78317 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
RNF4P78317 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
RNF4P78317 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
RNF4P78317 AC016396.2-201ENST00000562575 1417 ntBASIC16.02■□□□□ 0.16
RNF4P78317 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
RNF4P78317 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC16.02■□□□□ 0.16
RNF4P78317 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
RNF4P78317 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.02■□□□□ 0.16
RNF4P78317 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
RNF4P78317 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
RNF4P78317 PKD1P1-201ENST00000458669 6805 ntBASIC16.02■□□□□ 0.16
RNF4P78317 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
RNF4P78317 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
RNF4P78317 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.16
RNF4P78317 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
RNF4P78317 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
RNF4P78317 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.02■□□□□ 0.16
RNF4P78317 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
RNF4P78317 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
RNF4P78317 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.02■□□□□ 0.16
RNF4P78317 AC098831.1-202ENST00000438821 336 ntBASIC16.02■□□□□ 0.16
RNF4P78317 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC16.02■□□□□ 0.16
RNF4P78317 AC136632.2-201ENST00000512891 861 ntBASIC16.02■□□□□ 0.16
RNF4P78317 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC16.02■□□□□ 0.16
RNF4P78317 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC16.02■□□□□ 0.16
RNF4P78317 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC16.02■□□□□ 0.16
RNF4P78317 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC16.02■□□□□ 0.16
RNF4P78317 PGM5P2-202ENST00000637225 1043 ntBASIC16.02■□□□□ 0.16
RNF4P78317 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
RNF4P78317 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.15
RNF4P78317 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
RNF4P78317 GPR89P-201ENST00000407924 1495 ntBASIC16.02■□□□□ 0.15
RNF4P78317 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
RNF4P78317 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
RNF4P78317 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
RNF4P78317 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
RNF4P78317 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
RNF4P78317 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
RNF4P78317 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF4P78317 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
RNF4P78317 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
RNF4P78317 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.01■□□□□ 0.15
RNF4P78317 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
RNF4P78317 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.01■□□□□ 0.15
RNF4P78317 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
RNF4P78317 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF4P78317 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms