Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.48■□□□□ 0.23
RORAP35398 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC16.48■□□□□ 0.23
RORAP35398 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
RORAP35398 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RORAP35398 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
RORAP35398 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RORAP35398 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RORAP35398 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.48■□□□□ 0.23
RORAP35398 NOC2LP2-201ENST00000407594 1944 ntBASIC16.48■□□□□ 0.23
RORAP35398 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RORAP35398 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
RORAP35398 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.48■□□□□ 0.23
RORAP35398 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RORAP35398 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RORAP35398 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
RORAP35398 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
RORAP35398 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RORAP35398 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC16.48■□□□□ 0.23
RORAP35398 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.48■□□□□ 0.23
RORAP35398 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RORAP35398 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RORAP35398 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC16.48■□□□□ 0.23
RORAP35398 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RORAP35398 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
RORAP35398 AC006116.8-202ENST00000587620 1550 ntBASIC16.47■□□□□ 0.23
RORAP35398 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.47■□□□□ 0.23
RORAP35398 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.47■□□□□ 0.23
RORAP35398 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.47■□□□□ 0.23
RORAP35398 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
RORAP35398 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.47■□□□□ 0.23
RORAP35398 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RORAP35398 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RORAP35398 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
RORAP35398 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
RORAP35398 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.47■□□□□ 0.23
RORAP35398 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC16.47■□□□□ 0.23
RORAP35398 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RORAP35398 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC16.47■□□□□ 0.23
RORAP35398 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC16.47■□□□□ 0.23
RORAP35398 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC16.47■□□□□ 0.23
RORAP35398 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC16.47■□□□□ 0.23
RORAP35398 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC16.47■□□□□ 0.23
RORAP35398 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC16.47■□□□□ 0.23
RORAP35398 AC040169.1-201ENST00000565382 521 ntBASIC16.47■□□□□ 0.23
RORAP35398 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RORAP35398 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC16.47■□□□□ 0.23
RORAP35398 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.47■□□□□ 0.23
RORAP35398 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RORAP35398 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
RORAP35398 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.47■□□□□ 0.23
RORAP35398 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
RORAP35398 REXO1L11P-201ENST00000620964 1927 ntBASIC16.47■□□□□ 0.23
RORAP35398 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RORAP35398 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.46■□□□□ 0.23
RORAP35398 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.46■□□□□ 0.23
RORAP35398 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RORAP35398 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RORAP35398 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RORAP35398 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RORAP35398 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
RORAP35398 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
RORAP35398 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.46■□□□□ 0.23
RORAP35398 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.46■□□□□ 0.23
RORAP35398 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
RORAP35398 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
RORAP35398 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RORAP35398 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RORAP35398 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
RORAP35398 AC012317.2-201ENST00000623305 2251 ntBASIC16.46■□□□□ 0.23
RORAP35398 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.46■□□□□ 0.23
RORAP35398 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
RORAP35398 MIR1233-2-201ENST00000408138 82 ntBASIC16.46■□□□□ 0.23
RORAP35398 MIR1233-1-201ENST00000408722 82 ntBASIC16.46■□□□□ 0.23
RORAP35398 RPS15P9-201ENST00000494093 319 ntBASIC16.46■□□□□ 0.23
RORAP35398 IGHV3-65-201ENST00000523210 341 ntBASIC16.46■□□□□ 0.23
RORAP35398 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC16.46■□□□□ 0.23
RORAP35398 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC16.46■□□□□ 0.23
RORAP35398 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.46■□□□□ 0.23
RORAP35398 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC16.46■□□□□ 0.23
RORAP35398 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC16.46■□□□□ 0.23
RORAP35398 AC008667.4-201ENST00000607370 168 ntBASIC16.46■□□□□ 0.23
RORAP35398 AC064836.3-201ENST00000607928 673 ntBASIC16.46■□□□□ 0.23
RORAP35398 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.46■□□□□ 0.23
RORAP35398 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
RORAP35398 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RORAP35398 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RORAP35398 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RORAP35398 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC16.46■□□□□ 0.23
RORAP35398 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC16.46■□□□□ 0.23
RORAP35398 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RORAP35398 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC16.46■□□□□ 0.23
RORAP35398 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC16.46■□□□□ 0.22
RORAP35398 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.22
RORAP35398 AC097637.2-201ENST00000624096 1997 ntBASIC16.46■□□□□ 0.22
RORAP35398 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.46■□□□□ 0.22
RORAP35398 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.45■□□□□ 0.22
RORAP35398 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
RORAP35398 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RORAP35398 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RORAP35398 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms