Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
SIX3O95343 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SIX3O95343 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SIX3O95343 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SIX3O95343 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SIX3O95343 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
SIX3O95343 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SIX3O95343 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.95■□□□□ 0.3
SIX3O95343 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SIX3O95343 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SIX3O95343 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SIX3O95343 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SIX3O95343 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SIX3O95343 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SIX3O95343 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
SIX3O95343 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
SIX3O95343 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SIX3O95343 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.95■□□□□ 0.3
SIX3O95343 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SIX3O95343 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SIX3O95343 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
SIX3O95343 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SIX3O95343 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SIX3O95343 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SIX3O95343 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SIX3O95343 TNRC18P3-201ENST00000441896 2691 ntBASIC16.95■□□□□ 0.3
SIX3O95343 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
SIX3O95343 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
SIX3O95343 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.95■□□□□ 0.3
SIX3O95343 RNF216P1-203ENST00000404404 2427 ntBASIC16.95■□□□□ 0.3
SIX3O95343 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SIX3O95343 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SIX3O95343 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
SIX3O95343 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.95■□□□□ 0.3
SIX3O95343 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
SIX3O95343 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
SIX3O95343 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.94■□□□□ 0.3
SIX3O95343 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SIX3O95343 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SIX3O95343 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.94■□□□□ 0.3
SIX3O95343 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SIX3O95343 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SIX3O95343 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SIX3O95343 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SIX3O95343 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SIX3O95343 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.94■□□□□ 0.3
SIX3O95343 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.94■□□□□ 0.3
SIX3O95343 AL353593.2-201ENST00000602529 1483 ntBASIC16.94■□□□□ 0.3
SIX3O95343 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.94■□□□□ 0.3
SIX3O95343 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC16.94■□□□□ 0.3
SIX3O95343 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.94■□□□□ 0.3
SIX3O95343 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.94■□□□□ 0.3
SIX3O95343 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SIX3O95343 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SIX3O95343 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SIX3O95343 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.94■□□□□ 0.3
SIX3O95343 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.94■□□□□ 0.3
SIX3O95343 NME3-204ENST00000563498 920 ntTSL 2 BASIC16.94■□□□□ 0.3
SIX3O95343 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.94■□□□□ 0.3
SIX3O95343 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC16.94■□□□□ 0.3
SIX3O95343 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.94■□□□□ 0.3
SIX3O95343 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SIX3O95343 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SIX3O95343 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SIX3O95343 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SIX3O95343 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SIX3O95343 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SIX3O95343 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SIX3O95343 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SIX3O95343 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.94■□□□□ 0.3
SIX3O95343 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SIX3O95343 AC079328.2-201ENST00000561241 3354 ntBASIC16.94■□□□□ 0.3
SIX3O95343 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
SIX3O95343 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
SIX3O95343 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
SIX3O95343 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
SIX3O95343 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
SIX3O95343 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SIX3O95343 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SIX3O95343 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
SIX3O95343 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SIX3O95343 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SIX3O95343 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.93■□□□□ 0.3
SIX3O95343 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
SIX3O95343 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SIX3O95343 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
SIX3O95343 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.93■□□□□ 0.3
SIX3O95343 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SIX3O95343 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SIX3O95343 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.93■□□□□ 0.3
SIX3O95343 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.93■□□□□ 0.3
SIX3O95343 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC16.93■□□□□ 0.3
SIX3O95343 AC009533.2-201ENST00000543664 586 ntBASIC16.93■□□□□ 0.3
SIX3O95343 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SIX3O95343 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
SIX3O95343 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
SIX3O95343 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
SIX3O95343 AL135999.2-201ENST00000622438 1686 ntBASIC16.93■□□□□ 0.3
SIX3O95343 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SIX3O95343 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms