Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.48■□□□□ 0.23
PROM1O43490 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
PROM1O43490 KLF4P1-201ENST00000412782 1185 ntBASIC16.48■□□□□ 0.23
PROM1O43490 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC16.48■□□□□ 0.23
PROM1O43490 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.48■□□□□ 0.23
PROM1O43490 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.48■□□□□ 0.23
PROM1O43490 AC091304.2-201ENST00000564639 760 ntBASIC16.48■□□□□ 0.23
PROM1O43490 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PROM1O43490 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.48■□□□□ 0.23
PROM1O43490 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.48■□□□□ 0.23
PROM1O43490 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PROM1O43490 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC16.48■□□□□ 0.23
PROM1O43490 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.48■□□□□ 0.23
PROM1O43490 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PROM1O43490 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
PROM1O43490 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PROM1O43490 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.48■□□□□ 0.23
PROM1O43490 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
PROM1O43490 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
PROM1O43490 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.48■□□□□ 0.23
PROM1O43490 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PROM1O43490 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PROM1O43490 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PROM1O43490 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PROM1O43490 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PROM1O43490 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.48■□□□□ 0.23
PROM1O43490 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PROM1O43490 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PROM1O43490 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PROM1O43490 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PROM1O43490 AP005117.1-201ENST00000584346 1413 ntBASIC16.47■□□□□ 0.23
PROM1O43490 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
PROM1O43490 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PROM1O43490 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PROM1O43490 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PROM1O43490 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PROM1O43490 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.47■□□□□ 0.23
PROM1O43490 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.47■□□□□ 0.23
PROM1O43490 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PROM1O43490 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PROM1O43490 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.47■□□□□ 0.23
PROM1O43490 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC16.47■□□□□ 0.23
PROM1O43490 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.47■□□□□ 0.23
PROM1O43490 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.47■□□□□ 0.23
PROM1O43490 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC16.47■□□□□ 0.23
PROM1O43490 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PROM1O43490 AL732292.2-201ENST00000609649 430 ntBASIC16.47■□□□□ 0.23
PROM1O43490 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PROM1O43490 IRF5-214ENST00000613821 595 ntTSL 5 BASIC16.47■□□□□ 0.23
PROM1O43490 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PROM1O43490 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PROM1O43490 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PROM1O43490 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
PROM1O43490 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
PROM1O43490 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.46■□□□□ 0.23
PROM1O43490 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.46■□□□□ 0.23
PROM1O43490 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PROM1O43490 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
PROM1O43490 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
PROM1O43490 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PROM1O43490 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
PROM1O43490 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PROM1O43490 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
PROM1O43490 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.46■□□□□ 0.23
PROM1O43490 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.46■□□□□ 0.23
PROM1O43490 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
PROM1O43490 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
PROM1O43490 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PROM1O43490 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
PROM1O43490 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.46■□□□□ 0.23
PROM1O43490 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PROM1O43490 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PROM1O43490 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC16.46■□□□□ 0.23
PROM1O43490 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PROM1O43490 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PROM1O43490 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PROM1O43490 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PROM1O43490 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC16.46■□□□□ 0.23
PROM1O43490 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PROM1O43490 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
PROM1O43490 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC16.46■□□□□ 0.23
PROM1O43490 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.46■□□□□ 0.23
PROM1O43490 AP001269.4-201ENST00000609611 512 ntBASIC16.46■□□□□ 0.23
PROM1O43490 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
PROM1O43490 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PROM1O43490 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC16.46■□□□□ 0.23
PROM1O43490 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
PROM1O43490 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.46■□□□□ 0.23
PROM1O43490 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
PROM1O43490 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PROM1O43490 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PROM1O43490 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC16.46■□□□□ 0.23
PROM1O43490 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
PROM1O43490 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
PROM1O43490 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PROM1O43490 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
PROM1O43490 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.22
PROM1O43490 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
PROM1O43490 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PROM1O43490 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms