Protein–RNA interactions for Protein: Q6P9H4

CNKSR3, Connector enhancer of kinase suppressor of ras 3, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3Q6P9H4 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 AC109635.5-201ENST00000533593 962 ntBASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 SLC25A39P2-201ENST00000537614 270 ntBASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 AL158211.3-201ENST00000607385 239 ntBASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 AL390754.1-201ENST00000619088 582 ntBASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC18.51■□□□□ 0.55
CNKSR3Q6P9H4 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CNKSR3Q6P9H4 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CNKSR3Q6P9H4 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CNKSR3Q6P9H4 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CNKSR3Q6P9H4 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CNKSR3Q6P9H4 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CNKSR3Q6P9H4 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CNKSR3Q6P9H4 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CNKSR3Q6P9H4 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CNKSR3Q6P9H4 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CNKSR3Q6P9H4 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC18.5■□□□□ 0.55
CNKSR3Q6P9H4 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CNKSR3Q6P9H4 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC18.5■□□□□ 0.55
CNKSR3Q6P9H4 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CNKSR3Q6P9H4 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC18.5■□□□□ 0.55
CNKSR3Q6P9H4 AC008761.3-201ENST00000624803 892 ntBASIC18.5■□□□□ 0.55
CNKSR3Q6P9H4 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
CNKSR3Q6P9H4 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CNKSR3Q6P9H4 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CNKSR3Q6P9H4 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CNKSR3Q6P9H4 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CNKSR3Q6P9H4 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CNKSR3Q6P9H4 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.5■□□□□ 0.55
CNKSR3Q6P9H4 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
CNKSR3Q6P9H4 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CNKSR3Q6P9H4 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CNKSR3Q6P9H4 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 EDF1-203ENST00000371649 790 ntTSL 2 BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 LINC02560-201ENST00000596379 459 ntBASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 HFE2-206ENST00000634927 506 ntTSL 4 BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CNKSR3Q6P9H4 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms