Protein–RNA interactions for Protein: P55771

PAX9, Paired box protein Pax-9, humanhuman

Predictions only

Length 341 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAX9P55771 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PAX9P55771 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PAX9P55771 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC13.95□□□□□ -0.18
PAX9P55771 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
PAX9P55771 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PAX9P55771 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PAX9P55771 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
PAX9P55771 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
PAX9P55771 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PAX9P55771 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PAX9P55771 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PAX9P55771 Telomerase-vert.1-201ENST00000363312 438 ntBASIC13.95□□□□□ -0.18
PAX9P55771 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
PAX9P55771 AC096633.1-201ENST00000422446 749 ntBASIC13.95□□□□□ -0.18
PAX9P55771 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC13.95□□□□□ -0.18
PAX9P55771 DHDH-203ENST00000522614 776 ntTSL 5 BASIC13.95□□□□□ -0.18
PAX9P55771 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
PAX9P55771 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC13.95□□□□□ -0.18
PAX9P55771 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
PAX9P55771 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
PAX9P55771 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC13.95□□□□□ -0.18
PAX9P55771 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
PAX9P55771 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC13.95□□□□□ -0.18
PAX9P55771 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
PAX9P55771 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PAX9P55771 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC13.95□□□□□ -0.18
PAX9P55771 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PAX9P55771 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PAX9P55771 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
PAX9P55771 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PAX9P55771 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PAX9P55771 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PAX9P55771 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC13.95□□□□□ -0.18
PAX9P55771 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PAX9P55771 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC13.94□□□□□ -0.18
PAX9P55771 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PAX9P55771 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
PAX9P55771 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PAX9P55771 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PAX9P55771 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PAX9P55771 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC13.94□□□□□ -0.18
PAX9P55771 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
PAX9P55771 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
PAX9P55771 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
PAX9P55771 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PAX9P55771 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PAX9P55771 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PAX9P55771 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
PAX9P55771 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PAX9P55771 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PAX9P55771 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PAX9P55771 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC13.94□□□□□ -0.18
PAX9P55771 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
PAX9P55771 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC13.94□□□□□ -0.18
PAX9P55771 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC13.94□□□□□ -0.18
PAX9P55771 STX3-203ENST00000529177 1571 ntTSL 2 BASIC13.94□□□□□ -0.18
PAX9P55771 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC13.94□□□□□ -0.18
PAX9P55771 AC103702.1-201ENST00000548801 2630 ntBASIC13.94□□□□□ -0.18
PAX9P55771 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PAX9P55771 C2orf69P3-201ENST00000565542 1120 ntBASIC13.94□□□□□ -0.18
PAX9P55771 TEN1-204ENST00000588202 862 ntTSL 3 BASIC13.94□□□□□ -0.18
PAX9P55771 GXYLT1P4-201ENST00000613576 1192 ntBASIC13.94□□□□□ -0.18
PAX9P55771 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC13.94□□□□□ -0.18
PAX9P55771 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PAX9P55771 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC13.94□□□□□ -0.18
PAX9P55771 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
PAX9P55771 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
PAX9P55771 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC13.94□□□□□ -0.18
PAX9P55771 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
PAX9P55771 AC105917.1-201ENST00000506637 2539 ntBASIC13.94□□□□□ -0.18
PAX9P55771 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
PAX9P55771 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PAX9P55771 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PAX9P55771 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC13.94□□□□□ -0.18
PAX9P55771 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PAX9P55771 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PAX9P55771 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PAX9P55771 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
PAX9P55771 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC13.94□□□□□ -0.18
PAX9P55771 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
PAX9P55771 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
PAX9P55771 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
PAX9P55771 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC13.93□□□□□ -0.18
PAX9P55771 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
PAX9P55771 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
PAX9P55771 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
PAX9P55771 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
PAX9P55771 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
PAX9P55771 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
PAX9P55771 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC13.93□□□□□ -0.18
PAX9P55771 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
PAX9P55771 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC13.93□□□□□ -0.18
PAX9P55771 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
PAX9P55771 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC13.93□□□□□ -0.18
PAX9P55771 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
PAX9P55771 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
PAX9P55771 TSPY12P-201ENST00000421279 868 ntBASIC13.93□□□□□ -0.18
PAX9P55771 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC13.93□□□□□ -0.18
PAX9P55771 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
PAX9P55771 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms