Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.31
FOXA3P55318 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC13.08□□□□□ -0.31
FOXA3P55318 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
FOXA3P55318 AL513523.2-202ENST00000427283 2040 ntBASIC13.08□□□□□ -0.31
FOXA3P55318 SLC9A7P1-201ENST00000554295 3311 ntBASIC13.08□□□□□ -0.31
FOXA3P55318 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA3P55318 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA3P55318 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA3P55318 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA3P55318 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA3P55318 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC13.08□□□□□ -0.32
FOXA3P55318 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC13.08□□□□□ -0.32
FOXA3P55318 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA3P55318 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA3P55318 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC13.08□□□□□ -0.32
FOXA3P55318 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC13.08□□□□□ -0.32
FOXA3P55318 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
FOXA3P55318 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC13.08□□□□□ -0.32
FOXA3P55318 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA3P55318 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
FOXA3P55318 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA3P55318 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC13.08□□□□□ -0.32
FOXA3P55318 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA3P55318 AL353807.1-201ENST00000427475 662 ntBASIC13.08□□□□□ -0.32
FOXA3P55318 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC13.08□□□□□ -0.32
FOXA3P55318 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC13.08□□□□□ -0.32
FOXA3P55318 LY6E-205ENST00000519611 635 ntTSL 3 BASIC13.08□□□□□ -0.32
FOXA3P55318 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC13.08□□□□□ -0.32
FOXA3P55318 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC13.08□□□□□ -0.32
FOXA3P55318 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC13.08□□□□□ -0.32
FOXA3P55318 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA3P55318 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC13.08□□□□□ -0.32
FOXA3P55318 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC13.08□□□□□ -0.32
FOXA3P55318 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC13.08□□□□□ -0.32
FOXA3P55318 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC13.08□□□□□ -0.32
FOXA3P55318 AC092068.3-201ENST00000587894 2016 ntBASIC13.08□□□□□ -0.32
FOXA3P55318 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA3P55318 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC13.08□□□□□ -0.32
FOXA3P55318 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA3P55318 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC13.08□□□□□ -0.32
FOXA3P55318 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA3P55318 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA3P55318 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA3P55318 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA3P55318 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC13.07□□□□□ -0.32
FOXA3P55318 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA3P55318 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA3P55318 AC092171.3-201ENST00000610122 2651 ntBASIC13.07□□□□□ -0.32
FOXA3P55318 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA3P55318 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA3P55318 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
FOXA3P55318 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
FOXA3P55318 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA3P55318 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
FOXA3P55318 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC13.07□□□□□ -0.32
FOXA3P55318 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC13.07□□□□□ -0.32
FOXA3P55318 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA3P55318 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA3P55318 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC13.07□□□□□ -0.32
FOXA3P55318 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA3P55318 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA3P55318 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA3P55318 SERF2-207ENST00000409614 582 ntTSL 2 BASIC13.07□□□□□ -0.32
FOXA3P55318 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA3P55318 AC005104.2-201ENST00000427818 678 ntBASIC13.07□□□□□ -0.32
FOXA3P55318 AC069152.1-201ENST00000438030 544 ntBASIC13.07□□□□□ -0.32
FOXA3P55318 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC13.07□□□□□ -0.32
FOXA3P55318 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC13.07□□□□□ -0.32
FOXA3P55318 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC13.07□□□□□ -0.32
FOXA3P55318 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC13.07□□□□□ -0.32
FOXA3P55318 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC13.07□□□□□ -0.32
FOXA3P55318 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC13.07□□□□□ -0.32
FOXA3P55318 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC13.07□□□□□ -0.32
FOXA3P55318 CR392000.1-201ENST00000624770 1228 ntBASIC13.07□□□□□ -0.32
FOXA3P55318 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
FOXA3P55318 FSCN1P1-201ENST00000568912 1481 ntBASIC13.07□□□□□ -0.32
FOXA3P55318 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA3P55318 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA3P55318 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA3P55318 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA3P55318 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA3P55318 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA3P55318 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC13.07□□□□□ -0.32
FOXA3P55318 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA3P55318 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA3P55318 DBET-201ENST00000630918 3363 ntBASIC13.07□□□□□ -0.32
FOXA3P55318 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC13.07□□□□□ -0.32
FOXA3P55318 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA3P55318 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC13.07□□□□□ -0.32
FOXA3P55318 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC13.07□□□□□ -0.32
FOXA3P55318 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC13.07□□□□□ -0.32
FOXA3P55318 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA3P55318 AC046185.3-201ENST00000623228 1824 ntBASIC13.06□□□□□ -0.32
FOXA3P55318 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA3P55318 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA3P55318 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA3P55318 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA3P55318 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC13.06□□□□□ -0.32
FOXA3P55318 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA3P55318 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms