Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC19.49■□□□□ 0.71
CIITAP33076 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC19.49■□□□□ 0.71
CIITAP33076 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CIITAP33076 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
CIITAP33076 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
CIITAP33076 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CIITAP33076 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CIITAP33076 AC104109.2-201ENST00000602919 1418 ntBASIC19.49■□□□□ 0.71
CIITAP33076 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CIITAP33076 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
CIITAP33076 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CIITAP33076 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.49■□□□□ 0.71
CIITAP33076 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CIITAP33076 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CIITAP33076 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CIITAP33076 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CIITAP33076 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC19.48■□□□□ 0.71
CIITAP33076 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CIITAP33076 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CIITAP33076 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CIITAP33076 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CIITAP33076 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CIITAP33076 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
CIITAP33076 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CIITAP33076 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CIITAP33076 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC19.48■□□□□ 0.71
CIITAP33076 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CIITAP33076 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
CIITAP33076 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC19.48■□□□□ 0.71
CIITAP33076 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CIITAP33076 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CIITAP33076 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CIITAP33076 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC19.48■□□□□ 0.71
CIITAP33076 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC19.48■□□□□ 0.71
CIITAP33076 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC19.48■□□□□ 0.71
CIITAP33076 GGTLC5P-201ENST00000617623 998 ntBASIC19.48■□□□□ 0.71
CIITAP33076 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
CIITAP33076 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CIITAP33076 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
CIITAP33076 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CIITAP33076 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CIITAP33076 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CIITAP33076 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.48■□□□□ 0.71
CIITAP33076 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CIITAP33076 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CIITAP33076 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC19.47■□□□□ 0.71
CIITAP33076 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CIITAP33076 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CIITAP33076 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC19.47■□□□□ 0.71
CIITAP33076 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC19.47■□□□□ 0.71
CIITAP33076 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
CIITAP33076 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CIITAP33076 PCDHB18P-201ENST00000524813 2368 ntBASIC19.47■□□□□ 0.71
CIITAP33076 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CIITAP33076 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
CIITAP33076 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC19.47■□□□□ 0.71
CIITAP33076 AC108073.2-201ENST00000464002 357 ntBASIC19.47■□□□□ 0.71
CIITAP33076 AC108751.1-201ENST00000490852 363 ntBASIC19.47■□□□□ 0.71
CIITAP33076 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC19.47■□□□□ 0.71
CIITAP33076 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
CIITAP33076 AL671883.3-201ENST00000603274 991 ntBASIC19.47■□□□□ 0.71
CIITAP33076 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
CIITAP33076 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CIITAP33076 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
CIITAP33076 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CIITAP33076 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC19.47■□□□□ 0.71
CIITAP33076 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CIITAP33076 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CIITAP33076 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC19.47■□□□□ 0.71
CIITAP33076 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC19.46■□□□□ 0.71
CIITAP33076 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC19.46■□□□□ 0.71
CIITAP33076 HNRNPRP1-201ENST00000453465 1695 ntBASIC19.46■□□□□ 0.71
CIITAP33076 ZNF259P1-201ENST00000407656 1365 ntBASIC19.46■□□□□ 0.71
CIITAP33076 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC19.46■□□□□ 0.71
CIITAP33076 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CIITAP33076 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CIITAP33076 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC19.46■□□□□ 0.71
CIITAP33076 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CIITAP33076 SLC4A1APP2-201ENST00000424054 1259 ntBASIC19.46■□□□□ 0.71
CIITAP33076 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC19.46■□□□□ 0.71
CIITAP33076 PRSS29P-201ENST00000440800 595 ntBASIC19.46■□□□□ 0.71
CIITAP33076 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CIITAP33076 PIN1-206ENST00000587625 878 ntTSL 2 BASIC19.46■□□□□ 0.71
CIITAP33076 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CIITAP33076 AC141586.5-201ENST00000624546 2050 ntBASIC19.46■□□□□ 0.71
CIITAP33076 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CIITAP33076 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CIITAP33076 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CIITAP33076 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
CIITAP33076 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CIITAP33076 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
CIITAP33076 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC19.46■□□□□ 0.71
CIITAP33076 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC19.45■□□□□ 0.7
CIITAP33076 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
CIITAP33076 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CIITAP33076 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CIITAP33076 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC19.45■□□□□ 0.7
CIITAP33076 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
CIITAP33076 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC19.45■□□□□ 0.7
CIITAP33076 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms