Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC19.83■□□□□ 0.76
SMARCA1P28370 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
SMARCA1P28370 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SMARCA1P28370 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SMARCA1P28370 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SMARCA1P28370 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMARCA1P28370 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC19.82■□□□□ 0.76
SMARCA1P28370 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC19.82■□□□□ 0.76
SMARCA1P28370 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC19.82■□□□□ 0.76
SMARCA1P28370 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.82■□□□□ 0.76
SMARCA1P28370 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
SMARCA1P28370 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.82■□□□□ 0.76
SMARCA1P28370 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMARCA1P28370 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SMARCA1P28370 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMARCA1P28370 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SMARCA1P28370 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMARCA1P28370 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMARCA1P28370 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMARCA1P28370 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
SMARCA1P28370 MRPL20P1-201ENST00000400819 433 ntBASIC19.82■□□□□ 0.76
SMARCA1P28370 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC19.82■□□□□ 0.76
SMARCA1P28370 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC19.82■□□□□ 0.76
SMARCA1P28370 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SMARCA1P28370 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
SMARCA1P28370 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMARCA1P28370 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SMARCA1P28370 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMARCA1P28370 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.82■□□□□ 0.76
SMARCA1P28370 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC19.82■□□□□ 0.76
SMARCA1P28370 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCA1P28370 FRMD8P1-201ENST00000440433 1524 ntBASIC19.81■□□□□ 0.76
SMARCA1P28370 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCA1P28370 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCA1P28370 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCA1P28370 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC19.81■□□□□ 0.76
SMARCA1P28370 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCA1P28370 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCA1P28370 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCA1P28370 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC19.81■□□□□ 0.76
SMARCA1P28370 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCA1P28370 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCA1P28370 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCA1P28370 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCA1P28370 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCA1P28370 ATP6V0CP3-201ENST00000417255 467 ntBASIC19.81■□□□□ 0.76
SMARCA1P28370 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCA1P28370 AC087163.2-201ENST00000457299 853 ntBASIC19.81■□□□□ 0.76
SMARCA1P28370 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC19.81■□□□□ 0.76
SMARCA1P28370 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC19.81■□□□□ 0.76
SMARCA1P28370 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC19.81■□□□□ 0.76
SMARCA1P28370 OR7E47P-204ENST00000575924 449 ntBASIC19.81■□□□□ 0.76
SMARCA1P28370 PIN1-206ENST00000587625 878 ntTSL 2 BASIC19.81■□□□□ 0.76
SMARCA1P28370 AC010654.1-201ENST00000615722 808 ntBASIC19.81■□□□□ 0.76
SMARCA1P28370 AC004790.2-201ENST00000623588 572 ntBASIC19.81■□□□□ 0.76
SMARCA1P28370 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCA1P28370 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCA1P28370 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCA1P28370 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
SMARCA1P28370 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC19.81■□□□□ 0.76
SMARCA1P28370 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCA1P28370 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCA1P28370 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
SMARCA1P28370 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC19.81■□□□□ 0.76
SMARCA1P28370 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCA1P28370 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC19.8■□□□□ 0.76
SMARCA1P28370 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC19.8■□□□□ 0.76
SMARCA1P28370 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCA1P28370 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCA1P28370 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
SMARCA1P28370 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCA1P28370 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
SMARCA1P28370 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
SMARCA1P28370 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
SMARCA1P28370 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCA1P28370 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCA1P28370 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCA1P28370 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
SMARCA1P28370 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
SMARCA1P28370 VN2R19P-201ENST00000442399 1052 ntBASIC19.8■□□□□ 0.76
SMARCA1P28370 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC19.8■□□□□ 0.76
SMARCA1P28370 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC19.8■□□□□ 0.76
SMARCA1P28370 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCA1P28370 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC19.8■□□□□ 0.76
SMARCA1P28370 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC19.8■□□□□ 0.76
SMARCA1P28370 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCA1P28370 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCA1P28370 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCA1P28370 AL645608.8-201ENST00000606034 2086 ntBASIC19.8■□□□□ 0.76
SMARCA1P28370 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCA1P28370 AC139713.2-201ENST00000641328 2723 ntBASIC19.8■□□□□ 0.76
SMARCA1P28370 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCA1P28370 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCA1P28370 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCA1P28370 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC19.79■□□□□ 0.76
SMARCA1P28370 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCA1P28370 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCA1P28370 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCA1P28370 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCA1P28370 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms