Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC13.5□□□□□ -0.25
CXCL1P09341 KRT17P3-201ENST00000420566 1262 ntBASIC13.5□□□□□ -0.25
CXCL1P09341 GLI3-203ENST00000437480 451 ntTSL 2 BASIC13.5□□□□□ -0.25
CXCL1P09341 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC13.5□□□□□ -0.25
CXCL1P09341 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC13.5□□□□□ -0.25
CXCL1P09341 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CXCL1P09341 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC13.5□□□□□ -0.25
CXCL1P09341 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
CXCL1P09341 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CXCL1P09341 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC13.5□□□□□ -0.25
CXCL1P09341 AL353708.3-201ENST00000610272 989 ntBASIC13.5□□□□□ -0.25
CXCL1P09341 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC13.5□□□□□ -0.25
CXCL1P09341 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC13.5□□□□□ -0.25
CXCL1P09341 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CXCL1P09341 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CXCL1P09341 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CXCL1P09341 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
CXCL1P09341 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
CXCL1P09341 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
CXCL1P09341 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CXCL1P09341 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC13.5□□□□□ -0.25
CXCL1P09341 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CXCL1P09341 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
CXCL1P09341 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
CXCL1P09341 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC13.5□□□□□ -0.25
CXCL1P09341 AC034236.2-201ENST00000606662 1610 ntBASIC13.5□□□□□ -0.25
CXCL1P09341 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC13.5□□□□□ -0.25
CXCL1P09341 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CXCL1P09341 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CXCL1P09341 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
CXCL1P09341 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CXCL1P09341 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC13.49□□□□□ -0.25
CXCL1P09341 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CXCL1P09341 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CXCL1P09341 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CXCL1P09341 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CXCL1P09341 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC13.49□□□□□ -0.25
CXCL1P09341 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CXCL1P09341 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CXCL1P09341 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CXCL1P09341 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
CXCL1P09341 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC13.49□□□□□ -0.25
CXCL1P09341 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CXCL1P09341 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CXCL1P09341 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
CXCL1P09341 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC13.49□□□□□ -0.25
CXCL1P09341 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC13.49□□□□□ -0.25
CXCL1P09341 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC13.49□□□□□ -0.25
CXCL1P09341 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CXCL1P09341 AC046185.3-201ENST00000623228 1824 ntBASIC13.49□□□□□ -0.25
CXCL1P09341 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
CXCL1P09341 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CXCL1P09341 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CXCL1P09341 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC13.49□□□□□ -0.25
CXCL1P09341 PARL-206ENST00000435888 1098 ntTSL 5 BASIC13.49□□□□□ -0.25
CXCL1P09341 PPP1R14BP5-201ENST00000440334 435 ntBASIC13.49□□□□□ -0.25
CXCL1P09341 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC13.49□□□□□ -0.25
CXCL1P09341 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CXCL1P09341 AC098934.4-201ENST00000564127 592 ntBASIC13.49□□□□□ -0.25
CXCL1P09341 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC13.49□□□□□ -0.25
CXCL1P09341 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC13.49□□□□□ -0.25
CXCL1P09341 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC13.49□□□□□ -0.25
CXCL1P09341 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
CXCL1P09341 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
CXCL1P09341 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CXCL1P09341 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC13.49□□□□□ -0.25
CXCL1P09341 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC13.49□□□□□ -0.25
CXCL1P09341 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CXCL1P09341 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC13.49□□□□□ -0.25
CXCL1P09341 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CXCL1P09341 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC13.49□□□□□ -0.25
CXCL1P09341 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CXCL1P09341 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CXCL1P09341 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC13.49□□□□□ -0.25
CXCL1P09341 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC13.49□□□□□ -0.25
CXCL1P09341 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC13.49□□□□□ -0.25
CXCL1P09341 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CXCL1P09341 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC13.49□□□□□ -0.25
CXCL1P09341 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CXCL1P09341 AC138035.3-201ENST00000622706 2791 ntBASIC13.49□□□□□ -0.25
CXCL1P09341 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC13.48□□□□□ -0.25
CXCL1P09341 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC13.48□□□□□ -0.25
CXCL1P09341 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC13.48□□□□□ -0.25
CXCL1P09341 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CXCL1P09341 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
CXCL1P09341 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
CXCL1P09341 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC13.48□□□□□ -0.25
CXCL1P09341 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CXCL1P09341 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC13.48□□□□□ -0.25
CXCL1P09341 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CXCL1P09341 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC13.48□□□□□ -0.25
CXCL1P09341 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC13.48□□□□□ -0.25
CXCL1P09341 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CXCL1P09341 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC13.48□□□□□ -0.25
CXCL1P09341 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
CXCL1P09341 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC13.48□□□□□ -0.25
CXCL1P09341 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CXCL1P09341 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CXCL1P09341 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CXCL1P09341 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC13.48□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms