Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HLA-DQA1P01909 AC092384.3-202ENST00000564646 2873 ntBASIC13.1□□□□□ -0.31
HLA-DQA1P01909 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC13.1□□□□□ -0.31
HLA-DQA1P01909 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HLA-DQA1P01909 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC13.1□□□□□ -0.31
HLA-DQA1P01909 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 AC092171.3-201ENST00000610122 2651 ntBASIC13.09□□□□□ -0.31
HLA-DQA1P01909 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 ESRRAP1-201ENST00000400596 1257 ntBASIC13.09□□□□□ -0.31
HLA-DQA1P01909 THEM4-205ENST00000489410 643 ntTSL 2 BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DQA1P01909 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
HLA-DQA1P01909 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
HLA-DQA1P01909 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC13.08□□□□□ -0.31
HLA-DQA1P01909 ASL-204ENST00000395331 1538 ntTSL 5 BASIC13.08□□□□□ -0.31
HLA-DQA1P01909 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
HLA-DQA1P01909 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC13.08□□□□□ -0.31
HLA-DQA1P01909 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
HLA-DQA1P01909 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.31
HLA-DQA1P01909 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 MBP-202ENST00000355994 2772 ntTSL 5 BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 AC069544.1-201ENST00000609399 999 ntBASIC13.08□□□□□ -0.32
HLA-DQA1P01909 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms