Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
VPS4BO75351 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS4BO75351 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS4BO75351 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS4BO75351 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.05■□□□□ 0.32
VPS4BO75351 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.05■□□□□ 0.32
VPS4BO75351 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.04■□□□□ 0.32
VPS4BO75351 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.04■□□□□ 0.32
VPS4BO75351 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.04■□□□□ 0.32
VPS4BO75351 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4BO75351 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4BO75351 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4BO75351 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
VPS4BO75351 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4BO75351 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
VPS4BO75351 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
VPS4BO75351 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
VPS4BO75351 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4BO75351 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4BO75351 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4BO75351 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4BO75351 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4BO75351 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4BO75351 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC17.04■□□□□ 0.32
VPS4BO75351 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4BO75351 TSPY22P-201ENST00000427496 604 ntBASIC17.04■□□□□ 0.32
VPS4BO75351 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4BO75351 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC17.04■□□□□ 0.32
VPS4BO75351 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC17.04■□□□□ 0.32
VPS4BO75351 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4BO75351 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4BO75351 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4BO75351 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4BO75351 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4BO75351 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4BO75351 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.04■□□□□ 0.32
VPS4BO75351 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4BO75351 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4BO75351 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4BO75351 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4BO75351 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
VPS4BO75351 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4BO75351 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4BO75351 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC17.04■□□□□ 0.32
VPS4BO75351 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4BO75351 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.04■□□□□ 0.32
VPS4BO75351 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4BO75351 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4BO75351 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4BO75351 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.03■□□□□ 0.32
VPS4BO75351 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.03■□□□□ 0.32
VPS4BO75351 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
VPS4BO75351 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
VPS4BO75351 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4BO75351 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4BO75351 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.03■□□□□ 0.32
VPS4BO75351 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4BO75351 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4BO75351 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4BO75351 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4BO75351 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4BO75351 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4BO75351 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4BO75351 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.03■□□□□ 0.32
VPS4BO75351 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
VPS4BO75351 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4BO75351 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4BO75351 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4BO75351 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.03■□□□□ 0.32
VPS4BO75351 KRT18P31-201ENST00000506277 1292 ntBASIC17.03■□□□□ 0.32
VPS4BO75351 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.03■□□□□ 0.32
VPS4BO75351 AC012615.1-201ENST00000565797 1299 ntBASIC17.03■□□□□ 0.32
VPS4BO75351 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC17.03■□□□□ 0.32
VPS4BO75351 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
VPS4BO75351 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC17.03■□□□□ 0.32
VPS4BO75351 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.03■□□□□ 0.32
VPS4BO75351 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4BO75351 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
VPS4BO75351 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4BO75351 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
VPS4BO75351 AC116353.5-201ENST00000638148 1699 ntBASIC17.03■□□□□ 0.32
VPS4BO75351 CROCCP1-201ENST00000426910 5675 ntBASIC17.03■□□□□ 0.32
VPS4BO75351 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4BO75351 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4BO75351 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.03■□□□□ 0.32
VPS4BO75351 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4BO75351 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4BO75351 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4BO75351 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17.03■□□□□ 0.32
VPS4BO75351 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4BO75351 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4BO75351 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4BO75351 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.03■□□□□ 0.32
VPS4BO75351 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS4BO75351 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC17.02■□□□□ 0.32
VPS4BO75351 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.02■□□□□ 0.32
VPS4BO75351 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS4BO75351 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.02■□□□□ 0.32
VPS4BO75351 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VPS4BO75351 AL391807.1-203ENST00000604392 2365 ntBASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms