Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
TNFP01375 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TNFP01375 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TNFP01375 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TNFP01375 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TNFP01375 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TNFP01375 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.95■□□□□ 0.3
TNFP01375 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
TNFP01375 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TNFP01375 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TNFP01375 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.94■□□□□ 0.3
TNFP01375 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TNFP01375 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
TNFP01375 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TNFP01375 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TNFP01375 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TNFP01375 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.94■□□□□ 0.3
TNFP01375 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.94■□□□□ 0.3
TNFP01375 AC002310.6-201ENST00000624451 1377 ntBASIC16.94■□□□□ 0.3
TNFP01375 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
TNFP01375 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TNFP01375 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC16.94■□□□□ 0.3
TNFP01375 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
TNFP01375 AC018845.2-201ENST00000568326 409 ntBASIC16.94■□□□□ 0.3
TNFP01375 COX5A-206ENST00000568783 571 ntTSL 3 BASIC16.94■□□□□ 0.3
TNFP01375 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
TNFP01375 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.94■□□□□ 0.3
TNFP01375 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC16.94■□□□□ 0.3
TNFP01375 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
TNFP01375 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TNFP01375 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TNFP01375 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TNFP01375 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TNFP01375 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC16.94■□□□□ 0.3
TNFP01375 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TNFP01375 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
TNFP01375 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.94■□□□□ 0.3
TNFP01375 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC16.94■□□□□ 0.3
TNFP01375 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.94■□□□□ 0.3
TNFP01375 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TNFP01375 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TNFP01375 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC16.93■□□□□ 0.3
TNFP01375 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
TNFP01375 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TNFP01375 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TNFP01375 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
TNFP01375 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
TNFP01375 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TNFP01375 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
TNFP01375 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TNFP01375 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
TNFP01375 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TNFP01375 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
TNFP01375 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
TNFP01375 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TNFP01375 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
TNFP01375 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
TNFP01375 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TNFP01375 FIS1-203ENST00000442303 631 ntTSL 3 BASIC16.93■□□□□ 0.3
TNFP01375 DHDH-204ENST00000523250 634 ntTSL 5 BASIC16.93■□□□□ 0.3
TNFP01375 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.93■□□□□ 0.3
TNFP01375 AL691403.2-201ENST00000618460 490 ntBASIC16.93■□□□□ 0.3
TNFP01375 AC055717.3-201ENST00000622967 595 ntBASIC16.93■□□□□ 0.3
TNFP01375 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
TNFP01375 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
TNFP01375 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TNFP01375 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
TNFP01375 CD276-201ENST00000318424 2738 ntTSL 5 BASIC16.93■□□□□ 0.3
TNFP01375 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC16.93■□□□□ 0.3
TNFP01375 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC16.93■□□□□ 0.3
TNFP01375 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC16.93■□□□□ 0.3
TNFP01375 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
TNFP01375 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
TNFP01375 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TNFP01375 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
TNFP01375 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TNFP01375 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC16.93■□□□□ 0.3
TNFP01375 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
TNFP01375 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
TNFP01375 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC16.92■□□□□ 0.3
TNFP01375 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
TNFP01375 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
TNFP01375 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC16.92■□□□□ 0.3
TNFP01375 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
TNFP01375 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TNFP01375 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TNFP01375 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TNFP01375 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC16.92■□□□□ 0.3
TNFP01375 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TNFP01375 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.92■□□□□ 0.3
TNFP01375 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TNFP01375 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
TNFP01375 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TNFP01375 LYSMD4-203ENST00000378904 2122 ntBASIC16.92■□□□□ 0.3
TNFP01375 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
TNFP01375 MCCD1P2-201ENST00000423228 335 ntBASIC16.92■□□□□ 0.3
TNFP01375 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
TNFP01375 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC16.92■□□□□ 0.3
TNFP01375 AC096734.2-201ENST00000562054 433 ntBASIC16.92■□□□□ 0.3
TNFP01375 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms