Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
CDKL5O76039 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CDKL5O76039 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CDKL5O76039 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CDKL5O76039 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC20.21■□□□□ 0.83
CDKL5O76039 AL020989.1-201ENST00000422979 469 ntBASIC20.21■□□□□ 0.83
CDKL5O76039 RBSN-204ENST00000449050 903 ntTSL 2 BASIC20.21■□□□□ 0.83
CDKL5O76039 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CDKL5O76039 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC20.21■□□□□ 0.83
CDKL5O76039 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC20.21■□□□□ 0.83
CDKL5O76039 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CDKL5O76039 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CDKL5O76039 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC20.21■□□□□ 0.83
CDKL5O76039 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
CDKL5O76039 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CDKL5O76039 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC20.21■□□□□ 0.83
CDKL5O76039 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CDKL5O76039 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CDKL5O76039 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CDKL5O76039 RHBDF1P1-201ENST00000427504 1941 ntBASIC20.21■□□□□ 0.83
CDKL5O76039 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
CDKL5O76039 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CDKL5O76039 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CDKL5O76039 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
CDKL5O76039 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
CDKL5O76039 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC20.21■□□□□ 0.83
CDKL5O76039 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC20.21■□□□□ 0.83
CDKL5O76039 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC20.21■□□□□ 0.83
CDKL5O76039 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CDKL5O76039 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CDKL5O76039 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDKL5O76039 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDKL5O76039 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
CDKL5O76039 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
CDKL5O76039 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CDKL5O76039 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
CDKL5O76039 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDKL5O76039 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDKL5O76039 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC20.2■□□□□ 0.82
CDKL5O76039 SPDYE21P-201ENST00000413323 827 ntBASIC20.2■□□□□ 0.82
CDKL5O76039 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CDKL5O76039 SIGLEC30P-201ENST00000455569 941 ntBASIC20.2■□□□□ 0.82
CDKL5O76039 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC20.2■□□□□ 0.82
CDKL5O76039 FOSL1P1-201ENST00000511041 816 ntBASIC20.2■□□□□ 0.82
CDKL5O76039 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC20.2■□□□□ 0.82
CDKL5O76039 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC20.2■□□□□ 0.82
CDKL5O76039 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC20.2■□□□□ 0.82
CDKL5O76039 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC20.2■□□□□ 0.82
CDKL5O76039 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CDKL5O76039 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CDKL5O76039 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDKL5O76039 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDKL5O76039 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CDKL5O76039 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC20.2■□□□□ 0.82
CDKL5O76039 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDKL5O76039 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDKL5O76039 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC20.2■□□□□ 0.82
CDKL5O76039 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CDKL5O76039 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CDKL5O76039 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC20.2■□□□□ 0.82
CDKL5O76039 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
CDKL5O76039 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDKL5O76039 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDKL5O76039 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CDKL5O76039 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDKL5O76039 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDKL5O76039 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
CDKL5O76039 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDKL5O76039 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDKL5O76039 LINC02012-201ENST00000608206 1725 ntBASIC20.19■□□□□ 0.82
CDKL5O76039 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC20.19■□□□□ 0.82
CDKL5O76039 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDKL5O76039 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
CDKL5O76039 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
CDKL5O76039 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDKL5O76039 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDKL5O76039 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC20.19■□□□□ 0.82
CDKL5O76039 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDKL5O76039 SLC25A1P3-201ENST00000395415 828 ntBASIC20.19■□□□□ 0.82
CDKL5O76039 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CDKL5O76039 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CDKL5O76039 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
CDKL5O76039 IGHV3OR16-7-201ENST00000604106 360 ntBASIC20.19■□□□□ 0.82
CDKL5O76039 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC20.19■□□□□ 0.82
CDKL5O76039 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDKL5O76039 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDKL5O76039 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CDKL5O76039 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
CDKL5O76039 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CDKL5O76039 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CDKL5O76039 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDKL5O76039 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC20.19■□□□□ 0.82
CDKL5O76039 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDKL5O76039 SIGLEC16-201ENST00000599858 1437 ntBASIC20.19■□□□□ 0.82
CDKL5O76039 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDKL5O76039 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC20.18■□□□□ 0.82
CDKL5O76039 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
CDKL5O76039 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDKL5O76039 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC20.18■□□□□ 0.82
CDKL5O76039 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms