Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 AC093525.9-201ENST00000624961 1746 ntBASIC13.47□□□□□ -0.25
CCDC140Q96MF4 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 AC080080.1-201ENST00000625121 2420 ntBASIC13.47□□□□□ -0.25
CCDC140Q96MF4 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 LSM5-204ENST00000409909 740 ntTSL 2 BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 AC106795.1-205ENST00000512851 1056 ntBASIC13.46□□□□□ -0.25
CCDC140Q96MF4 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 AC073592.4-201ENST00000623827 446 ntBASIC13.46□□□□□ -0.25
CCDC140Q96MF4 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC140Q96MF4 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC13.46□□□□□ -0.26
CCDC140Q96MF4 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC13.46□□□□□ -0.26
CCDC140Q96MF4 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.26
CCDC140Q96MF4 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
CCDC140Q96MF4 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.26
CCDC140Q96MF4 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CCDC140Q96MF4 AP005117.1-201ENST00000584346 1413 ntBASIC13.46□□□□□ -0.26
CCDC140Q96MF4 SIGLEC16-201ENST00000599858 1437 ntBASIC13.46□□□□□ -0.26
CCDC140Q96MF4 AC079776.2-201ENST00000641154 1609 ntBASIC13.46□□□□□ -0.26
CCDC140Q96MF4 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC13.46□□□□□ -0.26
CCDC140Q96MF4 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
CCDC140Q96MF4 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
CCDC140Q96MF4 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 TPM1-218ENST00000559281 851 ntTSL 5 BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 COX5A-202ENST00000562233 441 ntTSL 3 BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 AC091304.2-201ENST00000564639 760 ntBASIC13.45□□□□□ -0.26
CCDC140Q96MF4 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
CCDC140Q96MF4 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms