Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 AC003669.1-201ENST00000334569 611 ntBASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 PON3-203ENST00000427422 894 ntTSL 3 BASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 IGHV3-52-201ENST00000519770 353 ntBASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 AC239800.4-201ENST00000603712 296 ntBASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 AL139288.1-201ENST00000623748 933 ntBASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
NKX2-3Q8TAU0 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
NKX2-3Q8TAU0 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
NKX2-3Q8TAU0 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NKX2-3Q8TAU0 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NKX2-3Q8TAU0 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
NKX2-3Q8TAU0 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NKX2-3Q8TAU0 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
NKX2-3Q8TAU0 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC20.53■□□□□ 0.88
NKX2-3Q8TAU0 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
NKX2-3Q8TAU0 PRYP5-201ENST00000451909 266 ntBASIC20.53■□□□□ 0.88
NKX2-3Q8TAU0 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC20.53■□□□□ 0.88
NKX2-3Q8TAU0 SNHG9-202ENST00000564014 471 ntBASIC20.53■□□□□ 0.88
NKX2-3Q8TAU0 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC20.53■□□□□ 0.88
NKX2-3Q8TAU0 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NKX2-3Q8TAU0 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC20.53■□□□□ 0.88
NKX2-3Q8TAU0 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC20.53■□□□□ 0.88
NKX2-3Q8TAU0 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NKX2-3Q8TAU0 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NKX2-3Q8TAU0 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NKX2-3Q8TAU0 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NKX2-3Q8TAU0 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC20.53■□□□□ 0.88
NKX2-3Q8TAU0 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC20.52■□□□□ 0.88
NKX2-3Q8TAU0 AC012313.1-201ENST00000593393 3059 ntBASIC20.52■□□□□ 0.88
NKX2-3Q8TAU0 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NKX2-3Q8TAU0 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NKX2-3Q8TAU0 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
NKX2-3Q8TAU0 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC20.52■□□□□ 0.88
NKX2-3Q8TAU0 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NKX2-3Q8TAU0 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
NKX2-3Q8TAU0 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
NKX2-3Q8TAU0 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NKX2-3Q8TAU0 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
NKX2-3Q8TAU0 AP002414.3-201ENST00000589352 1468 ntBASIC20.52■□□□□ 0.88
NKX2-3Q8TAU0 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
NKX2-3Q8TAU0 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
NKX2-3Q8TAU0 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC20.52■□□□□ 0.88
NKX2-3Q8TAU0 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
NKX2-3Q8TAU0 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC20.52■□□□□ 0.88
NKX2-3Q8TAU0 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC20.52■□□□□ 0.88
NKX2-3Q8TAU0 AC105339.3-201ENST00000560043 636 ntBASIC20.52■□□□□ 0.88
NKX2-3Q8TAU0 SDCCAG3P1-201ENST00000589292 1150 ntBASIC20.52■□□□□ 0.88
NKX2-3Q8TAU0 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NKX2-3Q8TAU0 AL596442.2-201ENST00000610240 980 ntBASIC20.52■□□□□ 0.88
NKX2-3Q8TAU0 AL022326.1-202ENST00000641533 845 ntBASIC20.52■□□□□ 0.88
NKX2-3Q8TAU0 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC20.52■□□□□ 0.88
NKX2-3Q8TAU0 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NKX2-3Q8TAU0 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NKX2-3Q8TAU0 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC20.52■□□□□ 0.88
NKX2-3Q8TAU0 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
NKX2-3Q8TAU0 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.87
NKX2-3Q8TAU0 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
NKX2-3Q8TAU0 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms